Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00975 and SMc00974 are separated by 81 nucleotides SMc00974 and SMc00973 overlap by 4 nucleotides SMc00973 and SMc00972 are separated by 51 nucleotides
SMc00975: SMc00975 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 963,594 to 965,717
SMc00975
SMc00974: SMc00974 - RNA methyltransferase, at 965,799 to 967,046
SMc00974
SMc00973: SMc00973 - hypothetical protein, at 967,043 to 967,798
SMc00973
SMc00972: SMc00972 - 1-deoxy-D-xylulose-5-phosphate synthase, at 967,850 to 969,787
SMc00972
Position (kb) 965
966
967
968 Strain fitness (log2 ratio) -2
-1
0
1 at 965.479 kb on + strand, within SMc00975 at 965.480 kb on - strand, within SMc00975 at 965.480 kb on - strand, within SMc00975 at 965.480 kb on - strand, within SMc00975 at 965.579 kb on + strand at 965.579 kb on + strand at 965.660 kb on - strand at 965.660 kb on - strand at 965.685 kb on + strand at 965.762 kb on + strand at 965.768 kb on + strand at 965.768 kb on + strand at 965.769 kb on - strand at 966.503 kb on + strand, within SMc00974 at 966.784 kb on + strand, within SMc00974 at 966.785 kb on - strand, within SMc00974 at 967.400 kb on - strand, within SMc00973 at 967.606 kb on - strand, within SMc00973 at 967.606 kb on - strand, within SMc00973 at 967.787 kb on - strand at 967.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 965,479 + SMc00975 0.89 -0.4 965,480 - SMc00975 0.89 -0.1 965,480 - SMc00975 0.89 -0.3 965,480 - SMc00975 0.89 -1.1 965,579 + -0.2 965,579 + -0.0 965,660 - -0.1 965,660 - +0.7 965,685 + +0.1 965,762 + +0.8 965,768 + +0.2 965,768 + -0.1 965,769 - -0.4 966,503 + SMc00974 0.56 -0.0 966,784 + SMc00974 0.79 +0.4 966,785 - SMc00974 0.79 +0.2 967,400 - SMc00973 0.47 -1.9 967,606 - SMc00973 0.74 -1.1 967,606 - SMc00973 0.74 -0.5 967,787 - -0.6 967,787 - +0.0
Or see this region's nucleotide sequence