Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00855 and SMc00854 are separated by 0 nucleotides SMc00854 and SMc00853 are separated by 227 nucleotides SMc00853 and SMc00852 are separated by 119 nucleotides
SMc00855: SMc00855 - glycyl-tRNA synthetase subunit alpha, at 931,119 to 932,054
SMc00855
SMc00854: SMc00854 - hypothetical protein, at 932,055 to 932,300
SMc00854
SMc00853: SMc00853 - hypothetical protein, at 932,528 to 933,076
SMc00853
SMc00852: SMc00852 - transmembrane signal peptide protein, at 933,196 to 935,130
SMc00852
Position (kb) 932
933 Strain fitness (log2 ratio) -1
0
1 at 932.185 kb on + strand, within SMc00854 at 932.186 kb on - strand, within SMc00854 at 932.311 kb on - strand at 932.311 kb on - strand at 932.334 kb on + strand at 932.334 kb on + strand at 932.335 kb on - strand at 932.335 kb on - strand at 932.335 kb on - strand at 932.340 kb on - strand at 932.340 kb on - strand at 932.564 kb on + strand at 932.581 kb on + strand at 932.732 kb on - strand, within SMc00853 at 932.933 kb on + strand, within SMc00853 at 933.024 kb on - strand at 933.074 kb on + strand at 933.107 kb on - strand at 933.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 932,185 + SMc00854 0.53 +1.5 932,186 - SMc00854 0.53 +1.0 932,311 - -0.7 932,311 - +0.1 932,334 + -0.8 932,334 + +0.0 932,335 - +0.6 932,335 - +0.1 932,335 - +0.0 932,340 - -0.1 932,340 - -0.3 932,564 + -0.4 932,581 + +0.0 932,732 - SMc00853 0.37 +0.4 932,933 + SMc00853 0.74 -0.1 933,024 - +1.3 933,074 + +0.3 933,107 - -0.3 933,283 + -0.1
Or see this region's nucleotide sequence