Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00475 and SMc00760 are separated by 239 nucleotides SMc00760 and SMc00473 are separated by 333 nucleotides
SMc00475: SMc00475 - alanyl-tRNA synthetase, at 1,945,275 to 1,947,938
SMc00475
SMc00760: SMc00760 - recombinase A, at 1,948,178 to 1,949,263
SMc00760
SMc00473: SMc00473 - carbohydrate kinase, at 1,949,597 to 1,950,556
SMc00473
Position (kb)
1948
1949
1950 Strain fitness (log2 ratio)
-2
-1
0
1 at 1947.949 kb on - strand at 1947.949 kb on - strand at 1947.949 kb on - strand at 1947.949 kb on - strand at 1947.949 kb on - strand at 1947.949 kb on - strand at 1947.957 kb on - strand at 1947.957 kb on - strand at 1947.957 kb on - strand at 1948.082 kb on - strand at 1948.082 kb on - strand at 1948.082 kb on - strand at 1948.093 kb on - strand at 1948.179 kb on + strand at 1948.353 kb on + strand, within SMc00760 at 1948.353 kb on + strand, within SMc00760 at 1948.353 kb on + strand, within SMc00760 at 1948.441 kb on - strand, within SMc00760 at 1948.580 kb on + strand, within SMc00760 at 1948.923 kb on + strand, within SMc00760 at 1948.923 kb on + strand, within SMc00760 at 1949.037 kb on + strand, within SMc00760 at 1949.038 kb on - strand, within SMc00760 at 1949.038 kb on - strand, within SMc00760 at 1949.129 kb on + strand, within SMc00760 at 1949.275 kb on + strand at 1949.275 kb on + strand at 1949.276 kb on - strand at 1949.276 kb on - strand at 1949.422 kb on + strand at 1949.422 kb on + strand at 1949.521 kb on - strand at 1949.521 kb on - strand at 1949.533 kb on + strand at 1949.533 kb on + strand at 1949.533 kb on + strand at 1949.647 kb on + strand at 1949.891 kb on + strand, within SMc00473 at 1949.892 kb on - strand, within SMc00473 at 1949.892 kb on - strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.951 kb on + strand, within SMc00473 at 1949.951 kb on + strand, within SMc00473 at 1949.952 kb on - strand, within SMc00473 at 1949.952 kb on - strand, within SMc00473
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,947,949 - +0.7 1,947,949 - -0.5 1,947,949 - +0.2 1,947,949 - +0.1 1,947,949 - -0.8 1,947,949 - -0.5 1,947,957 - +0.1 1,947,957 - +0.7 1,947,957 - +0.2 1,948,082 - +0.0 1,948,082 - +0.3 1,948,082 - -0.4 1,948,093 - +0.6 1,948,179 + +1.0 1,948,353 + SMc00760 0.16 -1.2 1,948,353 + SMc00760 0.16 -0.9 1,948,353 + SMc00760 0.16 +1.1 1,948,441 - SMc00760 0.24 +0.1 1,948,580 + SMc00760 0.37 -1.7 1,948,923 + SMc00760 0.69 -1.0 1,948,923 + SMc00760 0.69 -0.9 1,949,037 + SMc00760 0.79 -1.2 1,949,038 - SMc00760 0.79 -2.5 1,949,038 - SMc00760 0.79 -1.9 1,949,129 + SMc00760 0.88 -1.8 1,949,275 + -0.5 1,949,275 + -0.5 1,949,276 - +0.5 1,949,276 - +0.2 1,949,422 + +0.6 1,949,422 + +0.2 1,949,521 - +0.4 1,949,521 - -0.5 1,949,533 + +0.4 1,949,533 + -0.1 1,949,533 + +0.7 1,949,647 + -0.3 1,949,891 + SMc00473 0.31 -1.1 1,949,892 - SMc00473 0.31 +0.3 1,949,892 - SMc00473 0.31 +0.1 1,949,893 + SMc00473 0.31 -0.4 1,949,893 + SMc00473 0.31 +0.2 1,949,893 + SMc00473 0.31 -0.1 1,949,951 + SMc00473 0.37 +0.1 1,949,951 + SMc00473 0.37 +1.1 1,949,952 - SMc00473 0.37 +0.3 1,949,952 - SMc00473 0.37 +0.1
Or see this region's nucleotide sequence