Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00425 and SMc00461 overlap by 8 nucleotides SMc00461 and SMc00427 are separated by 98 nucleotides SMc00427 and SMc00428 are separated by 16 nucleotides SMc00428 and SMc00429 are separated by 84 nucleotides
SMc00425: SMc00425 - transcriptional regulator, at 373,932 to 374,369
SMc00425
SMc00461: SMc00461 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 374,362 to 374,844
SMc00461
SMc00427: SMc00427 - peptide chain release factor RF-3 protein, at 374,943 to 376,526
SMc00427
SMc00428: SMc00428 - transmembrane protein, at 376,543 to 377,439
SMc00428
SMc00429: SMc00429 - transcriptional regulator, at 377,524 to 378,333
SMc00429
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -1
0
1 at 374.165 kb on + strand, within SMc00425 at 374.165 kb on + strand, within SMc00425 at 374.165 kb on + strand, within SMc00425 at 374.363 kb on + strand at 374.364 kb on - strand at 374.368 kb on - strand at 374.368 kb on - strand at 374.368 kb on - strand at 374.652 kb on + strand, within SMc00461 at 374.653 kb on - strand, within SMc00461 at 374.858 kb on + strand at 374.859 kb on - strand at 374.859 kb on - strand at 374.909 kb on + strand at 375.238 kb on - strand, within SMc00427 at 375.396 kb on + strand, within SMc00427 at 375.487 kb on - strand, within SMc00427 at 375.487 kb on - strand, within SMc00427 at 376.287 kb on + strand, within SMc00427 at 376.504 kb on - strand at 376.544 kb on + strand at 376.545 kb on - strand at 376.545 kb on - strand at 377.194 kb on - strand, within SMc00428 at 377.417 kb on + strand at 377.418 kb on - strand at 377.418 kb on - strand at 377.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 374,165 + SMc00425 0.53 +0.8 374,165 + SMc00425 0.53 -0.3 374,165 + SMc00425 0.53 +0.3 374,363 + -1.2 374,364 - -0.1 374,368 - +0.7 374,368 - +1.6 374,368 - +0.6 374,652 + SMc00461 0.60 -1.4 374,653 - SMc00461 0.60 -1.1 374,858 + -1.0 374,859 - -0.1 374,859 - -1.0 374,909 + -0.4 375,238 - SMc00427 0.19 +0.6 375,396 + SMc00427 0.29 -0.4 375,487 - SMc00427 0.34 -0.0 375,487 - SMc00427 0.34 -0.0 376,287 + SMc00427 0.85 -1.0 376,504 - +0.5 376,544 + -0.8 376,545 - -1.0 376,545 - +1.6 377,194 - SMc00428 0.73 +0.2 377,417 + -0.4 377,418 - -0.0 377,418 - -0.0 377,501 + +0.4
Or see this region's nucleotide sequence