Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00403 and SMc00404 are separated by 136 nucleotides SMc00404 and SMc00405 are separated by 460 nucleotides
SMc00403: SMc00403 - NOL1/NOP2/SUN family signature protein, at 354,093 to 355,382
SMc00403
SMc00404: SMc00404 - hypothetical protein, at 355,519 to 355,893
SMc00404
SMc00405: SMc00405 - hypothetical protein, at 356,354 to 357,229
SMc00405
Position (kb) 355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.566 kb on + strand, within SMc00403 at 354.598 kb on + strand, within SMc00403 at 354.617 kb on + strand, within SMc00403 at 354.618 kb on - strand, within SMc00403 at 354.618 kb on - strand, within SMc00403 at 354.670 kb on + strand, within SMc00403 at 354.777 kb on + strand, within SMc00403 at 354.777 kb on + strand, within SMc00403 at 355.151 kb on - strand, within SMc00403 at 355.198 kb on + strand, within SMc00403 at 355.198 kb on + strand, within SMc00403 at 355.198 kb on + strand, within SMc00403 at 355.199 kb on - strand, within SMc00403 at 355.232 kb on - strand, within SMc00403 at 355.449 kb on + strand at 355.449 kb on + strand at 355.453 kb on + strand at 355.453 kb on + strand at 355.453 kb on + strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.538 kb on + strand at 355.538 kb on + strand at 355.776 kb on - strand, within SMc00404 at 355.947 kb on - strand at 356.348 kb on - strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.356 kb on - strand at 356.356 kb on - strand at 356.406 kb on + strand at 356.407 kb on - strand at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.754 kb on + strand, within SMc00405 at 356.754 kb on + strand, within SMc00405 at 356.755 kb on - strand, within SMc00405 at 356.755 kb on - strand, within SMc00405
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 354,566 + SMc00403 0.37 +1.4 354,598 + SMc00403 0.39 +0.5 354,617 + SMc00403 0.41 +0.2 354,618 - SMc00403 0.41 +0.3 354,618 - SMc00403 0.41 -0.1 354,670 + SMc00403 0.45 +0.6 354,777 + SMc00403 0.53 +0.1 354,777 + SMc00403 0.53 -0.2 355,151 - SMc00403 0.82 +0.4 355,198 + SMc00403 0.86 +0.4 355,198 + SMc00403 0.86 -0.0 355,198 + SMc00403 0.86 +0.2 355,199 - SMc00403 0.86 -0.4 355,232 - SMc00403 0.88 -0.5 355,449 + +2.4 355,449 + +0.6 355,453 + -0.1 355,453 + +0.2 355,453 + -0.8 355,454 - -0.1 355,454 - -2.1 355,454 - -0.8 355,454 - +0.2 355,454 - -0.2 355,454 - -0.9 355,454 - +1.4 355,538 + +0.3 355,538 + -0.2 355,776 - SMc00404 0.69 -0.7 355,947 - +0.2 356,348 - -0.3 356,355 + +0.6 356,355 + -0.4 356,355 + -1.5 356,355 + -0.4 356,356 - -0.8 356,356 - -0.0 356,406 + +0.6 356,407 - -0.7 356,500 + SMc00405 0.17 +1.2 356,500 + SMc00405 0.17 +0.0 356,500 + SMc00405 0.17 -1.4 356,500 + SMc00405 0.17 +0.4 356,501 - SMc00405 0.17 -2.4 356,501 - SMc00405 0.17 +1.0 356,501 - SMc00405 0.17 +0.1 356,501 - SMc00405 0.17 -0.0 356,501 - SMc00405 0.17 +0.4 356,754 + SMc00405 0.46 -0.1 356,754 + SMc00405 0.46 +1.3 356,755 - SMc00405 0.46 -0.3 356,755 - SMc00405 0.46 -0.7
Or see this region's nucleotide sequence