Strain Fitness in Sinorhizobium meliloti 1021 around SMc00404
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
354,566 | + | SMc00403 | 0.37 | +1.4 | |
354,598 | + | SMc00403 | 0.39 | +0.5 | |
354,617 | + | SMc00403 | 0.41 | +0.2 | |
354,618 | - | SMc00403 | 0.41 | +0.3 | |
354,618 | - | SMc00403 | 0.41 | -0.1 | |
354,670 | + | SMc00403 | 0.45 | +0.6 | |
354,777 | + | SMc00403 | 0.53 | +0.1 | |
354,777 | + | SMc00403 | 0.53 | -0.2 | |
355,151 | - | SMc00403 | 0.82 | +0.4 | |
355,198 | + | SMc00403 | 0.86 | +0.4 | |
355,198 | + | SMc00403 | 0.86 | -0.0 | |
355,198 | + | SMc00403 | 0.86 | +0.2 | |
355,199 | - | SMc00403 | 0.86 | -0.4 | |
355,232 | - | SMc00403 | 0.88 | -0.5 | |
355,449 | + | +2.4 | |||
355,449 | + | +0.6 | |||
355,453 | + | -0.1 | |||
355,453 | + | +0.2 | |||
355,453 | + | -0.8 | |||
355,454 | - | -0.1 | |||
355,454 | - | -2.1 | |||
355,454 | - | -0.8 | |||
355,454 | - | +0.2 | |||
355,454 | - | -0.2 | |||
355,454 | - | -0.9 | |||
355,454 | - | +1.4 | |||
355,538 | + | +0.3 | |||
355,538 | + | -0.2 | |||
355,776 | - | SMc00404 | 0.69 | -0.7 | |
355,947 | - | +0.2 | |||
356,348 | - | -0.3 | |||
356,355 | + | +0.6 | |||
356,355 | + | -0.4 | |||
356,355 | + | -1.5 | |||
356,355 | + | -0.4 | |||
356,356 | - | -0.8 | |||
356,356 | - | -0.0 | |||
356,406 | + | +0.6 | |||
356,407 | - | -0.7 | |||
356,500 | + | SMc00405 | 0.17 | +1.2 | |
356,500 | + | SMc00405 | 0.17 | +0.0 | |
356,500 | + | SMc00405 | 0.17 | -1.4 | |
356,500 | + | SMc00405 | 0.17 | +0.4 | |
356,501 | - | SMc00405 | 0.17 | -2.4 | |
356,501 | - | SMc00405 | 0.17 | +1.0 | |
356,501 | - | SMc00405 | 0.17 | +0.1 | |
356,501 | - | SMc00405 | 0.17 | -0.0 | |
356,501 | - | SMc00405 | 0.17 | +0.4 | |
356,754 | + | SMc00405 | 0.46 | -0.1 | |
356,754 | + | SMc00405 | 0.46 | +1.3 | |
356,755 | - | SMc00405 | 0.46 | -0.3 | |
356,755 | - | SMc00405 | 0.46 | -0.7 |
Or see this region's nucleotide sequence