Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00017 and SMc00018 overlap by 4 nucleotides SMc00018 and SMc00072 are separated by 210 nucleotides SMc00072 and SMc00073 are separated by 55 nucleotides
SMc00017: SMc00017 - homoserine kinase, at 999,940 to 1,000,920
SMc00017
SMc00018: SMc00018 - ribonuclease H, at 1,000,917 to 1,001,378
SMc00018
SMc00072: SMc00072 - peroxiredoxin protein, at 1,001,589 to 1,002,074
SMc00072
SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068
SMc00073
Position (kb)
1001
1002
1003 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1000.888 kb on + strand at 1001.376 kb on + strand at 1001.377 kb on - strand at 1001.756 kb on + strand, within SMc00072 at 1002.093 kb on - strand at 1002.095 kb on - strand at 1002.095 kb on - strand at 1002.095 kb on - strand at 1002.118 kb on + strand at 1002.119 kb on - strand at 1002.120 kb on + strand at 1002.121 kb on - strand at 1002.196 kb on - strand at 1002.534 kb on + strand, within SMc00073 at 1002.535 kb on - strand, within SMc00073 at 1002.535 kb on - strand, within SMc00073 at 1002.764 kb on + strand, within SMc00073 at 1002.765 kb on - strand, within SMc00073 at 1003.025 kb on - strand at 1003.041 kb on - strand at 1003.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,000,888 + -0.9 1,001,376 + +0.2 1,001,377 - -1.5 1,001,756 + SMc00072 0.34 -1.0 1,002,093 - -0.2 1,002,095 - +0.9 1,002,095 - -1.0 1,002,095 - +1.3 1,002,118 + -1.5 1,002,119 - +0.0 1,002,120 + -2.8 1,002,121 - -0.1 1,002,196 - -2.2 1,002,534 + SMc00073 0.43 -1.7 1,002,535 - SMc00073 0.43 -1.3 1,002,535 - SMc00073 0.43 +1.3 1,002,764 + SMc00073 0.68 -0.3 1,002,765 - SMc00073 0.68 +0.3 1,003,025 - -0.1 1,003,041 - +0.5 1,003,041 - -0.4
Or see this region's nucleotide sequence