Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00009 and SMc00010 are separated by 19 nucleotides SMc00010 and SMc00450 overlap by 4 nucleotides
SMc00009: SMc00009 - cytochrome C oxidase subunit II protein, at 992,038 to 992,922
SMc00009
SMc00010: SMc00010 - cytochrome C oxidase polypeptide I transmembrane protein, at 992,942 to 994,630
SMc00010
SMc00450: SMc00450 - protoheme IX farnesyltransferase, at 994,627 to 995,679
SMc00450
Position (kb) 992
993
994
995 Strain fitness (log2 ratio) -2
-1
0
1 at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.298 kb on + strand, within SMc00009 at 992.455 kb on + strand, within SMc00009 at 992.725 kb on + strand, within SMc00009 at 992.726 kb on - strand, within SMc00009 at 992.726 kb on - strand, within SMc00009 at 992.728 kb on + strand, within SMc00009 at 992.729 kb on - strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.806 kb on + strand, within SMc00009 at 992.806 kb on + strand, within SMc00009 at 993.191 kb on + strand, within SMc00010 at 994.200 kb on - strand, within SMc00010 at 994.220 kb on + strand, within SMc00010 at 994.298 kb on + strand, within SMc00010 at 994.722 kb on + strand at 995.143 kb on + strand, within SMc00450 at 995.155 kb on + strand, within SMc00450 at 995.420 kb on - strand, within SMc00450
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 992,185 + SMc00009 0.17 +0.3 992,185 + SMc00009 0.17 -0.3 992,185 + SMc00009 0.17 -1.1 992,186 - SMc00009 0.17 +0.3 992,186 - SMc00009 0.17 +0.3 992,298 + SMc00009 0.29 -1.9 992,455 + SMc00009 0.47 -2.0 992,725 + SMc00009 0.78 -0.0 992,726 - SMc00009 0.78 -1.0 992,726 - SMc00009 0.78 -0.7 992,728 + SMc00009 0.78 -0.4 992,729 - SMc00009 0.78 -0.3 992,767 + SMc00009 0.82 -1.4 992,767 + SMc00009 0.82 +0.3 992,767 + SMc00009 0.82 -0.6 992,806 + SMc00009 0.87 -1.0 992,806 + SMc00009 0.87 -0.8 993,191 + SMc00010 0.15 +0.3 994,200 - SMc00010 0.74 +1.3 994,220 + SMc00010 0.76 -0.3 994,298 + SMc00010 0.80 -1.7 994,722 + -1.5 995,143 + SMc00450 0.49 +1.3 995,155 + SMc00450 0.50 -0.7 995,420 - SMc00450 0.75 -2.3
Or see this region's nucleotide sequence