Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00071 and SMc00009 are separated by 401 nucleotides SMc00009 and SMc00010 are separated by 19 nucleotides
SMc00071: SMc00071 - hypothetical protein, at 991,106 to 991,636
SMc00071
SMc00009: SMc00009 - cytochrome C oxidase subunit II protein, at 992,038 to 992,922
SMc00009
SMc00010: SMc00010 - cytochrome C oxidase polypeptide I transmembrane protein, at 992,942 to 994,630
SMc00010
Position (kb) 992
993 Strain fitness (log2 ratio) -2
-1
0
1 at 991.057 kb on - strand at 991.669 kb on - strand at 991.690 kb on - strand at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.298 kb on + strand, within SMc00009 at 992.455 kb on + strand, within SMc00009 at 992.725 kb on + strand, within SMc00009 at 992.726 kb on - strand, within SMc00009 at 992.726 kb on - strand, within SMc00009 at 992.728 kb on + strand, within SMc00009 at 992.729 kb on - strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.806 kb on + strand, within SMc00009 at 992.806 kb on + strand, within SMc00009 at 993.191 kb on + strand, within SMc00010
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 991,057 - -0.1 991,669 - -0.5 991,690 - -0.3 992,185 + SMc00009 0.17 +0.3 992,185 + SMc00009 0.17 -0.3 992,185 + SMc00009 0.17 -1.1 992,186 - SMc00009 0.17 +0.3 992,186 - SMc00009 0.17 +0.3 992,298 + SMc00009 0.29 -1.9 992,455 + SMc00009 0.47 -2.0 992,725 + SMc00009 0.78 -0.0 992,726 - SMc00009 0.78 -1.0 992,726 - SMc00009 0.78 -0.7 992,728 + SMc00009 0.78 -0.4 992,729 - SMc00009 0.78 -0.3 992,767 + SMc00009 0.82 -1.4 992,767 + SMc00009 0.82 +0.3 992,767 + SMc00009 0.82 -0.6 992,806 + SMc00009 0.87 -1.0 992,806 + SMc00009 0.87 -0.8 993,191 + SMc00010 0.15 +0.3
Or see this region's nucleotide sequence