Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1691 and SMa5033 are separated by 776 nucleotides SMa5033 and SMa1696 are separated by 114 nucleotides
SMa1691: SMa1691 - Cation transport ATPase, at 952,528 to 953,982
SMa1691
SMa5033: SMa5033 - hypothetical protein, at 954,759 to 955,475
SMa5033
SMa1696: SMa1696 - Sensor histidine kinase, at 955,590 to 956,786
SMa1696
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1 at 953.812 kb on - strand, within SMa1691 at 953.812 kb on - strand, within SMa1691 at 953.897 kb on - strand at 953.897 kb on - strand at 953.903 kb on + strand at 953.989 kb on - strand at 954.023 kb on + strand at 954.023 kb on + strand at 954.023 kb on + strand at 954.084 kb on - strand at 954.166 kb on + strand at 954.166 kb on + strand at 954.166 kb on + strand at 954.167 kb on - strand at 954.167 kb on - strand at 954.239 kb on + strand at 954.240 kb on - strand at 954.330 kb on + strand at 954.331 kb on - strand at 954.338 kb on - strand at 954.390 kb on + strand at 954.391 kb on - strand at 954.415 kb on - strand at 954.415 kb on - strand at 954.507 kb on - strand at 954.783 kb on - strand at 954.807 kb on - strand at 954.808 kb on + strand at 954.808 kb on + strand at 955.212 kb on + strand, within SMa5033 at 955.408 kb on + strand at 955.408 kb on + strand at 955.408 kb on + strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.479 kb on - strand at 955.539 kb on + strand at 955.539 kb on + strand at 955.540 kb on - strand at 955.846 kb on + strand, within SMa1696 at 955.846 kb on + strand, within SMa1696 at 955.877 kb on + strand, within SMa1696 at 955.877 kb on + strand, within SMa1696 at 955.878 kb on - strand, within SMa1696 at 955.880 kb on + strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.908 kb on - strand, within SMa1696 at 955.915 kb on + strand, within SMa1696 at 956.013 kb on + strand, within SMa1696 at 956.189 kb on + strand, within SMa1696 at 956.293 kb on + strand, within SMa1696 at 956.293 kb on + strand, within SMa1696 at 956.471 kb on - strand, within SMa1696
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 953,812 - SMa1691 0.88 +0.3 953,812 - SMa1691 0.88 -0.5 953,897 - -0.2 953,897 - -0.6 953,903 + -0.7 953,989 - +0.1 954,023 + -2.6 954,023 + -1.3 954,023 + -0.3 954,084 - +0.1 954,166 + -1.3 954,166 + -0.1 954,166 + -0.9 954,167 - +0.2 954,167 - -0.1 954,239 + +0.7 954,240 - -0.4 954,330 + -0.4 954,331 - +0.2 954,338 - +0.3 954,390 + -0.2 954,391 - -0.2 954,415 - -0.3 954,415 - -0.1 954,507 - +0.2 954,783 - -0.6 954,807 - +0.1 954,808 + +0.4 954,808 + +0.4 955,212 + SMa5033 0.63 -0.9 955,408 + -1.6 955,408 + -0.7 955,408 + -1.0 955,409 - -0.3 955,409 - +1.4 955,479 - +0.2 955,539 + -1.0 955,539 + -0.6 955,540 - +0.7 955,846 + SMa1696 0.21 -0.1 955,846 + SMa1696 0.21 +0.3 955,877 + SMa1696 0.24 +0.4 955,877 + SMa1696 0.24 +0.0 955,878 - SMa1696 0.24 +0.6 955,880 + SMa1696 0.24 +0.8 955,881 - SMa1696 0.24 +0.6 955,881 - SMa1696 0.24 -0.3 955,881 - SMa1696 0.24 +0.1 955,881 - SMa1696 0.24 +0.6 955,908 - SMa1696 0.27 +0.1 955,915 + SMa1696 0.27 -1.1 956,013 + SMa1696 0.35 +1.3 956,189 + SMa1696 0.50 +0.7 956,293 + SMa1696 0.59 +0.6 956,293 + SMa1696 0.59 +0.8 956,471 - SMa1696 0.74 +0.5
Or see this region's nucleotide sequence