Strain Fitness in Sinorhizobium meliloti 1021 around SMa1765

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1761 and SMa1765 are separated by 378 nucleotidesSMa1765 and SMa1766 are separated by 27 nucleotides SMa1761: SMa1761 - aminotransferase, at 1,001,791 to 1,003,107 SMa1761 SMa1765: SMa1765 - hypothetical protein, at 1,003,486 to 1,003,971 SMa1765 SMa1766: SMa1766 - hypothetical protein, at 1,003,999 to 1,004,250 SMa1766 Position (kb) 1003 1004Strain fitness (log2 ratio) -2 -1 0 1 2at 1002.548 kb on + strand, within SMa1761at 1002.822 kb on + strand, within SMa1761at 1002.826 kb on - strand, within SMa1761at 1002.826 kb on - strand, within SMa1761at 1002.826 kb on - strand, within SMa1761at 1002.927 kb on - strand, within SMa1761at 1003.117 kb on + strandat 1003.117 kb on + strandat 1003.117 kb on + strandat 1003.118 kb on - strandat 1003.221 kb on - strandat 1003.232 kb on - strandat 1003.395 kb on + strandat 1003.395 kb on + strandat 1003.488 kb on - strandat 1003.650 kb on + strand, within SMa1765at 1003.651 kb on - strand, within SMa1765at 1003.930 kb on + strandat 1004.026 kb on + strand, within SMa1766at 1004.027 kb on - strand, within SMa1766at 1004.090 kb on + strand, within SMa1766at 1004.090 kb on + strand, within SMa1766at 1004.091 kb on - strand, within SMa1766at 1004.091 kb on - strand, within SMa1766at 1004.091 kb on - strand, within SMa1766at 1004.091 kb on - strand, within SMa1766at 1004.091 kb on - strand, within SMa1766at 1004.091 kb on - strand, within SMa1766at 1004.230 kb on - strandat 1004.245 kb on - strandat 1004.269 kb on + strandat 1004.270 kb on - strandat 1004.274 kb on - strandat 1004.274 kb on - strandat 1004.274 kb on - strandat 1004.285 kb on + strandat 1004.285 kb on + strandat 1004.285 kb on + strandat 1004.286 kb on - strandat 1004.353 kb on + strandat 1004.354 kb on - strandat 1004.354 kb on - strandat 1004.469 kb on - strandat 1004.497 kb on + strandat 1004.616 kb on + strandat 1004.616 kb on + strandat 1004.648 kb on + strandat 1004.805 kb on + strandat 1004.826 kb on + strandat 1004.826 kb on + strandat 1004.914 kb on + strandat 1004.923 kb on + strandat 1004.962 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,002,548 + SMa1761 0.57 -0.7
1,002,822 + SMa1761 0.78 -0.5
1,002,826 - SMa1761 0.79 +0.3
1,002,826 - SMa1761 0.79 -0.0
1,002,826 - SMa1761 0.79 +0.3
1,002,927 - SMa1761 0.86 -0.2
1,003,117 + +0.2
1,003,117 + +0.3
1,003,117 + -0.1
1,003,118 - +0.5
1,003,221 - +0.2
1,003,232 - -0.7
1,003,395 + +0.5
1,003,395 + +0.5
1,003,488 - -0.5
1,003,650 + SMa1765 0.34 -1.4
1,003,651 - SMa1765 0.34 -1.7
1,003,930 + +0.1
1,004,026 + SMa1766 0.11 -0.7
1,004,027 - SMa1766 0.11 -0.4
1,004,090 + SMa1766 0.36 +0.5
1,004,090 + SMa1766 0.36 +2.5
1,004,091 - SMa1766 0.37 +0.5
1,004,091 - SMa1766 0.37 +0.2
1,004,091 - SMa1766 0.37 -0.2
1,004,091 - SMa1766 0.37 +1.5
1,004,091 - SMa1766 0.37 -0.6
1,004,091 - SMa1766 0.37 +0.2
1,004,230 - +0.5
1,004,245 - -0.5
1,004,269 + -0.2
1,004,270 - -0.3
1,004,274 - +0.2
1,004,274 - +0.6
1,004,274 - +0.0
1,004,285 + +1.5
1,004,285 + -0.2
1,004,285 + -1.5
1,004,286 - -0.0
1,004,353 + -0.6
1,004,354 - -0.8
1,004,354 - +0.9
1,004,469 - -2.2
1,004,497 + -0.0
1,004,616 + -0.9
1,004,616 + -0.6
1,004,648 + -0.6
1,004,805 + -0.2
1,004,826 + -0.1
1,004,826 + +0.1
1,004,914 + +0.2
1,004,923 + -1.4
1,004,962 + -0.9

Or see this region's nucleotide sequence