Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0872 and SMa0873 overlap by 1 nucleotides SMa0873 and SMa0874 are separated by 87 nucleotides SMa0874 and SMa0875 are separated by 6 nucleotides
SMa0872: SMa0872 - hypothetical protein, at 483,424 to 483,756
SMa0872
SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081
SMa0873
SMa0874: SMa0874 - NodN dehydratase, at 485,169 to 485,654
SMa0874
SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858
SMa0875
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.868 kb on - strand at 482.869 kb on + strand at 483.048 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.085 kb on - strand at 483.087 kb on - strand at 483.175 kb on - strand at 483.283 kb on + strand at 483.401 kb on - strand at 483.489 kb on + strand, within SMa0872 at 483.647 kb on + strand, within SMa0872 at 483.648 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.779 kb on + strand at 483.779 kb on + strand at 483.971 kb on - strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.140 kb on - strand, within SMa0873 at 484.181 kb on + strand, within SMa0873 at 484.265 kb on + strand, within SMa0873 at 484.266 kb on - strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.298 kb on - strand, within SMa0873 at 484.324 kb on + strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.386 kb on - strand, within SMa0873 at 484.387 kb on + strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.536 kb on + strand, within SMa0873 at 484.537 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.728 kb on + strand, within SMa0873 at 484.740 kb on - strand, within SMa0873 at 484.828 kb on + strand, within SMa0873 at 484.936 kb on + strand, within SMa0873 at 485.283 kb on + strand, within SMa0874 at 485.287 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.520 kb on + strand, within SMa0874 at 485.521 kb on - strand, within SMa0874 at 485.666 kb on + strand at 485.785 kb on - strand at 485.809 kb on + strand at 485.810 kb on - strand at 485.810 kb on - strand at 485.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 482,868 - +0.3 482,869 + -1.2 483,048 + -0.3 483,069 + +1.3 483,070 - -0.9 483,085 - +0.0 483,087 - -0.1 483,175 - +0.2 483,283 + +0.8 483,401 - -0.4 483,489 + SMa0872 0.20 -0.6 483,647 + SMa0872 0.67 -0.1 483,648 - SMa0872 0.67 -0.8 483,654 - SMa0872 0.69 -1.3 483,654 - SMa0872 0.69 -0.6 483,779 + -0.5 483,779 + +0.9 483,971 - SMa0873 0.16 -0.3 484,048 + SMa0873 0.22 -0.6 484,048 + SMa0873 0.22 -0.6 484,048 + SMa0873 0.22 +0.4 484,140 - SMa0873 0.29 -0.9 484,181 + SMa0873 0.32 -0.4 484,265 + SMa0873 0.38 -0.2 484,266 - SMa0873 0.38 -1.0 484,297 + SMa0873 0.41 -0.4 484,297 + SMa0873 0.41 -0.8 484,298 - SMa0873 0.41 +0.3 484,324 + SMa0873 0.43 +0.3 484,328 - SMa0873 0.43 +0.4 484,328 - SMa0873 0.43 +0.6 484,386 - SMa0873 0.48 +0.7 484,387 + SMa0873 0.48 -0.7 484,388 - SMa0873 0.48 -0.7 484,388 - SMa0873 0.48 +0.5 484,491 - SMa0873 0.55 -0.3 484,491 - SMa0873 0.55 +2.3 484,491 - SMa0873 0.55 -0.0 484,536 + SMa0873 0.59 -0.0 484,537 - SMa0873 0.59 -0.3 484,565 - SMa0873 0.61 -0.3 484,565 - SMa0873 0.61 -1.3 484,728 + SMa0873 0.73 -0.5 484,740 - SMa0873 0.74 -0.4 484,828 + SMa0873 0.81 -0.1 484,936 + SMa0873 0.89 +0.1 485,283 + SMa0874 0.23 -1.6 485,287 - SMa0874 0.24 -1.7 485,302 - SMa0874 0.27 +0.2 485,302 - SMa0874 0.27 -0.0 485,520 + SMa0874 0.72 +0.4 485,521 - SMa0874 0.72 +0.2 485,666 + +0.6 485,785 - -0.4 485,809 + -1.8 485,810 - -0.4 485,810 - +0.3 485,856 + -0.8
Or see this region's nucleotide sequence