Strain Fitness in Sinorhizobium meliloti 1021 around SMa0870

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0868 and SMa0869 overlap by 4 nucleotidesSMa0869 and SMa0870 are separated by 265 nucleotidesSMa0870 and SMa0872 are separated by 687 nucleotides SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957 SMa0868 SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544 SMa0869 SMa0870: SMa0870 - NodD1 nod-box dependent transcriptional activator, at 481,810 to 482,736 SMa0870 SMa0872: SMa0872 - hypothetical protein, at 483,424 to 483,756 SMa0872 Position (kb) 481 482 483Strain fitness (log2 ratio) -2 -1 0 1at 480.822 kb on - strand, within SMa0868at 480.889 kb on + strand, within SMa0868at 480.889 kb on + strand, within SMa0868at 480.891 kb on + strand, within SMa0868at 480.891 kb on + strand, within SMa0868at 480.892 kb on - strandat 480.937 kb on + strandat 480.938 kb on - strandat 480.942 kb on - strandat 480.958 kb on - strandat 481.138 kb on + strand, within SMa0869at 481.273 kb on + strand, within SMa0869at 481.273 kb on + strand, within SMa0869at 481.276 kb on - strand, within SMa0869at 481.316 kb on + strand, within SMa0869at 481.316 kb on + strand, within SMa0869at 481.317 kb on - strand, within SMa0869at 481.518 kb on + strandat 481.519 kb on - strandat 481.546 kb on + strandat 481.547 kb on - strandat 481.547 kb on - strandat 481.547 kb on - strandat 481.547 kb on - strandat 481.654 kb on - strandat 481.740 kb on + strandat 482.039 kb on + strand, within SMa0870at 482.079 kb on - strand, within SMa0870at 482.132 kb on + strand, within SMa0870at 482.133 kb on - strand, within SMa0870at 482.378 kb on - strand, within SMa0870at 482.378 kb on - strand, within SMa0870at 482.687 kb on + strandat 482.735 kb on - strandat 482.754 kb on - strandat 482.868 kb on - strandat 482.869 kb on + strandat 483.048 kb on + strandat 483.069 kb on + strandat 483.070 kb on - strandat 483.085 kb on - strandat 483.087 kb on - strandat 483.175 kb on - strandat 483.283 kb on + strandat 483.401 kb on - strandat 483.489 kb on + strand, within SMa0872at 483.647 kb on + strand, within SMa0872at 483.648 kb on - strand, within SMa0872at 483.654 kb on - strand, within SMa0872at 483.654 kb on - strand, within SMa0872

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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480,822 - SMa0868 0.79 -0.3
480,889 + SMa0868 0.89 -0.6
480,889 + SMa0868 0.89 -0.0
480,891 + SMa0868 0.90 +0.2
480,891 + SMa0868 0.90 -0.9
480,892 - +0.6
480,937 + -0.3
480,938 - -0.3
480,942 - -0.5
480,958 - -1.6
481,138 + SMa0869 0.31 -0.7
481,273 + SMa0869 0.54 -0.1
481,273 + SMa0869 0.54 -0.6
481,276 - SMa0869 0.54 -0.1
481,316 + SMa0869 0.61 -0.3
481,316 + SMa0869 0.61 -0.5
481,317 - SMa0869 0.61 -0.4
481,518 + +0.3
481,519 - -0.3
481,546 + +0.7
481,547 - +0.5
481,547 - +0.6
481,547 - -2.6
481,547 - +1.0
481,654 - -0.6
481,740 + -0.1
482,039 + SMa0870 0.25 +0.7
482,079 - SMa0870 0.29 +0.0
482,132 + SMa0870 0.35 -0.1
482,133 - SMa0870 0.35 -0.2
482,378 - SMa0870 0.61 +0.5
482,378 - SMa0870 0.61 +0.3
482,687 + -0.3
482,735 - -0.1
482,754 - -0.1
482,868 - +0.3
482,869 + -1.2
483,048 + -0.3
483,069 + +1.3
483,070 - -0.9
483,085 - +0.0
483,087 - -0.1
483,175 - +0.2
483,283 + +0.8
483,401 - -0.4
483,489 + SMa0872 0.20 -0.6
483,647 + SMa0872 0.67 -0.1
483,648 - SMa0872 0.67 -0.8
483,654 - SMa0872 0.69 -1.3
483,654 - SMa0872 0.69 -0.6

Or see this region's nucleotide sequence