Strain Fitness in Sinorhizobium meliloti 1021 around SMa0360

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0357 and SMa0359 are separated by 8 nucleotidesSMa0359 and SMa0360 overlap by 4 nucleotidesSMa0360 and SMa0364 are separated by 588 nucleotides SMa0357: SMa0357 - hypothetical protein, at 193,272 to 193,553 SMa0357 SMa0359: SMa0359 - hypothetical protein, at 193,562 to 193,807 SMa0359 SMa0360: SMa0360 - transposase, at 193,804 to 194,493 SMa0360 SMa0364: SMa0364 - hypothetical protein, at 195,082 to 196,866 SMa0364 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1at 192.808 kb on + strandat 192.840 kb on - strandat 192.840 kb on - strandat 192.841 kb on + strandat 192.841 kb on + strandat 192.910 kb on + strandat 192.911 kb on - strandat 192.911 kb on - strandat 192.914 kb on + strandat 192.915 kb on - strandat 192.957 kb on - strandat 193.012 kb on + strandat 193.060 kb on + strandat 193.103 kb on - strandat 193.124 kb on - strandat 193.295 kb on + strandat 193.296 kb on - strandat 193.317 kb on + strand, within SMa0357at 193.317 kb on + strand, within SMa0357at 193.371 kb on + strand, within SMa0357at 193.371 kb on + strand, within SMa0357at 193.402 kb on + strand, within SMa0357at 193.433 kb on + strand, within SMa0357at 193.563 kb on + strandat 193.633 kb on + strand, within SMa0359at 193.634 kb on - strand, within SMa0359at 193.636 kb on - strand, within SMa0359at 193.674 kb on + strand, within SMa0359at 193.694 kb on + strand, within SMa0359at 193.716 kb on + strand, within SMa0359at 193.730 kb on + strand, within SMa0359at 193.731 kb on - strand, within SMa0359at 193.731 kb on - strand, within SMa0359at 193.790 kb on + strandat 193.813 kb on + strandat 193.814 kb on - strandat 193.814 kb on - strandat 193.963 kb on - strand, within SMa0360at 194.196 kb on - strand, within SMa0360at 194.322 kb on + strand, within SMa0360at 194.512 kb on + strandat 194.513 kb on - strandat 194.537 kb on + strandat 194.537 kb on + strandat 194.538 kb on - strandat 194.558 kb on + strandat 194.558 kb on + strandat 194.558 kb on + strandat 194.659 kb on - strandat 194.700 kb on + strandat 194.700 kb on + strandat 194.701 kb on - strandat 194.701 kb on - strandat 194.703 kb on + strandat 194.703 kb on + strandat 194.778 kb on - strandat 194.856 kb on - strandat 194.856 kb on - strandat 194.906 kb on - strandat 194.906 kb on - strandat 194.913 kb on + strandat 194.914 kb on - strandat 194.914 kb on - strandat 194.939 kb on + strandat 194.940 kb on - strandat 194.940 kb on - strandat 194.940 kb on - strandat 194.962 kb on - strandat 195.135 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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192,808 + -0.9
192,840 - +1.4
192,840 - +0.5
192,841 + +0.3
192,841 + -0.0
192,910 + -0.3
192,911 - +0.2
192,911 - -0.1
192,914 + -0.5
192,915 - -0.1
192,957 - -0.3
193,012 + +0.6
193,060 + +0.1
193,103 - -1.1
193,124 - -0.8
193,295 + +0.4
193,296 - -0.3
193,317 + SMa0357 0.16 -0.7
193,317 + SMa0357 0.16 +1.6
193,371 + SMa0357 0.35 -0.1
193,371 + SMa0357 0.35 +0.1
193,402 + SMa0357 0.46 +0.1
193,433 + SMa0357 0.57 -1.2
193,563 + -0.4
193,633 + SMa0359 0.29 +0.1
193,634 - SMa0359 0.29 -0.3
193,636 - SMa0359 0.30 -0.2
193,674 + SMa0359 0.46 +0.6
193,694 + SMa0359 0.54 -0.3
193,716 + SMa0359 0.63 -0.9
193,730 + SMa0359 0.68 +0.6
193,731 - SMa0359 0.69 -0.5
193,731 - SMa0359 0.69 -0.0
193,790 + +0.2
193,813 + -1.7
193,814 - -0.2
193,814 - -0.2
193,963 - SMa0360 0.23 +0.1
194,196 - SMa0360 0.57 +1.5
194,322 + SMa0360 0.75 +0.6
194,512 + -0.0
194,513 - -0.1
194,537 + -0.4
194,537 + -0.1
194,538 - -0.9
194,558 + +0.1
194,558 + -2.1
194,558 + +0.2
194,659 - -0.3
194,700 + +0.3
194,700 + +0.3
194,701 - +0.6
194,701 - -0.5
194,703 + -0.2
194,703 + -0.2
194,778 - +0.6
194,856 - -0.3
194,856 - +0.1
194,906 - -0.0
194,906 - -0.6
194,913 + -1.9
194,914 - -0.6
194,914 - +0.8
194,939 + -0.5
194,940 - -0.3
194,940 - +0.2
194,940 - +0.1
194,962 - -0.0
195,135 + +0.4

Or see this region's nucleotide sequence