Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0204 and SMa0206 overlap by 4 nucleotides SMa0206 and SMa0209 are separated by 124 nucleotides
SMa0204: SMa0204 - sensor histidine kinase, at 112,578 to 113,825
SMa0204
SMa0206: SMa0206 - Response regulator, at 113,822 to 114,544
SMa0206
SMa0209: SMa0209 - hypothetical protein, at 114,669 to 115,757
SMa0209
Position (kb) 113
114
115 Strain fitness (log2 ratio) -1
0
1 at 112.952 kb on - strand, within SMa0204 at 113.016 kb on + strand, within SMa0204 at 113.018 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.399 kb on + strand, within SMa0204 at 113.747 kb on + strand at 113.748 kb on - strand at 113.748 kb on - strand at 113.748 kb on - strand at 113.864 kb on + strand at 113.864 kb on + strand at 113.865 kb on - strand at 113.959 kb on + strand, within SMa0206 at 113.971 kb on + strand, within SMa0206 at 114.086 kb on + strand, within SMa0206 at 114.086 kb on + strand, within SMa0206 at 114.087 kb on - strand, within SMa0206 at 114.087 kb on - strand, within SMa0206 at 114.134 kb on + strand, within SMa0206 at 114.310 kb on + strand, within SMa0206 at 114.311 kb on - strand, within SMa0206 at 114.398 kb on + strand, within SMa0206 at 114.489 kb on - strand at 114.489 kb on - strand at 114.519 kb on + strand at 114.600 kb on + strand at 114.601 kb on - strand at 114.629 kb on - strand at 114.649 kb on + strand at 114.693 kb on + strand at 114.801 kb on + strand, within SMa0209 at 114.807 kb on + strand, within SMa0209 at 114.807 kb on + strand, within SMa0209 at 114.837 kb on - strand, within SMa0209 at 114.837 kb on - strand, within SMa0209 at 114.849 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.980 kb on + strand, within SMa0209 at 115.067 kb on + strand, within SMa0209 at 115.067 kb on + strand, within SMa0209 at 115.068 kb on - strand, within SMa0209 at 115.071 kb on + strand, within SMa0209 at 115.274 kb on + strand, within SMa0209 at 115.274 kb on + strand, within SMa0209 at 115.274 kb on + strand, within SMa0209 at 115.275 kb on - strand, within SMa0209 at 115.275 kb on - strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.279 kb on - strand, within SMa0209 at 115.279 kb on - strand, within SMa0209 at 115.280 kb on + strand, within SMa0209 at 115.281 kb on - strand, within SMa0209 at 115.317 kb on + strand, within SMa0209 at 115.317 kb on + strand, within SMa0209 at 115.318 kb on - strand, within SMa0209 at 115.318 kb on - strand, within SMa0209 at 115.464 kb on + strand, within SMa0209 at 115.465 kb on - strand, within SMa0209
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 112,952 - SMa0204 0.30 -0.1 113,016 + SMa0204 0.35 +0.2 113,018 + SMa0204 0.35 -0.2 113,063 + SMa0204 0.39 +0.2 113,063 + SMa0204 0.39 -0.0 113,063 + SMa0204 0.39 +0.1 113,063 + SMa0204 0.39 +0.9 113,399 + SMa0204 0.66 -0.2 113,747 + -0.0 113,748 - -1.0 113,748 - -0.4 113,748 - -0.1 113,864 + -0.4 113,864 + -0.2 113,865 - -0.4 113,959 + SMa0206 0.19 +0.2 113,971 + SMa0206 0.21 -0.7 114,086 + SMa0206 0.37 -0.6 114,086 + SMa0206 0.37 +0.8 114,087 - SMa0206 0.37 +0.0 114,087 - SMa0206 0.37 +1.0 114,134 + SMa0206 0.43 +0.4 114,310 + SMa0206 0.67 +0.8 114,311 - SMa0206 0.68 -0.2 114,398 + SMa0206 0.80 +0.0 114,489 - +1.5 114,489 - -0.0 114,519 + +0.1 114,600 + +0.8 114,601 - +0.2 114,629 - -0.2 114,649 + -0.7 114,693 + +0.0 114,801 + SMa0209 0.12 -0.4 114,807 + SMa0209 0.13 -1.3 114,807 + SMa0209 0.13 -0.1 114,837 - SMa0209 0.15 -0.1 114,837 - SMa0209 0.15 +0.4 114,849 + SMa0209 0.17 -0.8 114,853 + SMa0209 0.17 +1.0 114,853 + SMa0209 0.17 -0.3 114,853 + SMa0209 0.17 -1.0 114,853 + SMa0209 0.17 +0.2 114,980 + SMa0209 0.29 -0.4 115,067 + SMa0209 0.37 +0.6 115,067 + SMa0209 0.37 -0.8 115,068 - SMa0209 0.37 -0.4 115,071 + SMa0209 0.37 +0.2 115,274 + SMa0209 0.56 +0.4 115,274 + SMa0209 0.56 -0.5 115,274 + SMa0209 0.56 -0.6 115,275 - SMa0209 0.56 +0.1 115,275 - SMa0209 0.56 +0.6 115,278 + SMa0209 0.56 -0.1 115,278 + SMa0209 0.56 +0.1 115,278 + SMa0209 0.56 -0.4 115,278 + SMa0209 0.56 +0.5 115,279 - SMa0209 0.56 -0.2 115,279 - SMa0209 0.56 -0.4 115,280 + SMa0209 0.56 +0.6 115,281 - SMa0209 0.56 +0.2 115,317 + SMa0209 0.60 -0.4 115,317 + SMa0209 0.60 +0.2 115,318 - SMa0209 0.60 +0.3 115,318 - SMa0209 0.60 +0.5 115,464 + SMa0209 0.73 +0.7 115,465 - SMa0209 0.73 -0.1
Or see this region's nucleotide sequence