Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21450 and SM_b21452 are separated by 184 nucleotides SM_b21452 and SM_b21454 are separated by 266 nucleotides SM_b21454 and SM_b21455 are separated by 2 nucleotides
SM_b21450: SM_b21450 - hypothetical protein, at 1,380,308 to 1,380,847
_b21450
SM_b21452: SM_b21452 - hypothetical protein, at 1,381,032 to 1,381,556
_b21452
SM_b21454: SM_b21454 - hypothetical protein, at 1,381,823 to 1,382,137
_b21454
SM_b21455: SM_b21455 - hypothetical protein, at 1,382,140 to 1,383,507
_b21455
Position (kb)
1381
1382
1383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1380.982 kb on + strand at 1380.982 kb on + strand at 1380.983 kb on - strand at 1381.000 kb on + strand at 1381.001 kb on - strand at 1381.001 kb on - strand at 1381.001 kb on - strand at 1381.001 kb on - strand at 1381.048 kb on + strand at 1381.049 kb on - strand at 1381.063 kb on + strand at 1381.063 kb on + strand at 1381.064 kb on - strand at 1381.064 kb on - strand at 1381.178 kb on + strand, within SM_b21452 at 1381.178 kb on + strand, within SM_b21452 at 1381.179 kb on - strand, within SM_b21452 at 1381.179 kb on - strand, within SM_b21452 at 1381.737 kb on + strand at 1381.738 kb on - strand at 1381.738 kb on - strand at 1381.738 kb on - strand at 1381.811 kb on + strand at 1381.812 kb on - strand at 1382.075 kb on - strand, within SM_b21454 at 1382.177 kb on - strand at 1382.185 kb on - strand at 1382.203 kb on - strand at 1382.203 kb on - strand at 1382.278 kb on + strand, within SM_b21455 at 1382.279 kb on - strand, within SM_b21455 at 1382.355 kb on - strand, within SM_b21455 at 1383.056 kb on + strand, within SM_b21455
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,380,982 + -0.3 1,380,982 + -2.8 1,380,983 - -1.5 1,381,000 + +1.2 1,381,001 - +1.9 1,381,001 - +0.3 1,381,001 - +0.9 1,381,001 - +0.4 1,381,048 + +0.8 1,381,049 - -1.5 1,381,063 + +1.4 1,381,063 + +0.4 1,381,064 - -0.1 1,381,064 - +0.2 1,381,178 + SM_b21452 0.28 +0.3 1,381,178 + SM_b21452 0.28 -0.4 1,381,179 - SM_b21452 0.28 +0.9 1,381,179 - SM_b21452 0.28 -0.1 1,381,737 + -0.1 1,381,738 - +0.1 1,381,738 - -0.7 1,381,738 - -0.2 1,381,811 + -0.6 1,381,812 - -0.1 1,382,075 - SM_b21454 0.80 -0.7 1,382,177 - -1.0 1,382,185 - -0.4 1,382,203 - +0.2 1,382,203 - -0.4 1,382,278 + SM_b21455 0.10 -0.5 1,382,279 - SM_b21455 0.10 +0.1 1,382,355 - SM_b21455 0.16 -0.4 1,383,056 + SM_b21455 0.67 +0.2
Or see this region's nucleotide sequence