Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21284 and SM_b21285 are separated by 167 nucleotides SM_b21285 and SM_b21286 are separated by 5 nucleotides SM_b21286 and SM_b21287 are separated by 13 nucleotides
SM_b21284: SM_b21284 - uricase, at 858,904 to 860,319
_b21284
SM_b21285: SM_b21285 - transthyretin-like protein, at 860,487 to 860,858
_b21285
SM_b21286: SM_b21286 - xanthine dehydrogenase, at 860,864 to 862,345
_b21286
SM_b21287: SM_b21287 - xanthine dehydrogenase, at 862,359 to 864,692
_b21287
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -1
0
1 at 860.045 kb on - strand, within SM_b21284 at 860.105 kb on + strand, within SM_b21284 at 860.226 kb on - strand at 860.274 kb on + strand at 860.319 kb on + strand at 860.320 kb on - strand at 860.320 kb on - strand at 860.360 kb on + strand at 860.688 kb on + strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.803 kb on - strand, within SM_b21285 at 860.803 kb on - strand, within SM_b21285 at 860.829 kb on + strand at 860.835 kb on + strand at 860.836 kb on - strand at 860.844 kb on + strand at 860.845 kb on - strand at 860.845 kb on - strand at 861.240 kb on - strand, within SM_b21286 at 861.324 kb on - strand, within SM_b21286 at 861.681 kb on - strand, within SM_b21286 at 861.787 kb on + strand, within SM_b21286 at 861.993 kb on - strand, within SM_b21286 at 862.021 kb on + strand, within SM_b21286 at 862.022 kb on - strand, within SM_b21286 at 862.022 kb on - strand, within SM_b21286 at 862.340 kb on - strand at 862.340 kb on - strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.343 kb on + strand at 862.344 kb on - strand at 862.344 kb on - strand at 862.455 kb on + strand at 862.456 kb on - strand at 862.457 kb on + strand at 862.457 kb on + strand at 862.457 kb on + strand at 862.457 kb on + strand at 862.458 kb on - strand at 862.458 kb on - strand at 862.459 kb on + strand at 862.459 kb on + strand at 862.460 kb on - strand at 862.466 kb on + strand at 862.467 kb on - strand at 862.497 kb on + strand at 862.600 kb on + strand, within SM_b21287 at 862.600 kb on + strand, within SM_b21287 at 862.600 kb on + strand, within SM_b21287 at 862.741 kb on + strand, within SM_b21287 at 862.741 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.223 kb on + strand, within SM_b21287 at 863.224 kb on - strand, within SM_b21287
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 860,045 - SM_b21284 0.81 -0.2 860,105 + SM_b21284 0.85 -0.7 860,226 - +0.6 860,274 + -0.0 860,319 + -0.1 860,320 - -0.3 860,320 - +0.0 860,360 + -0.8 860,688 + SM_b21285 0.54 +0.7 860,689 - SM_b21285 0.54 +1.3 860,689 - SM_b21285 0.54 +0.9 860,689 - SM_b21285 0.54 +1.3 860,802 + SM_b21285 0.85 +0.3 860,802 + SM_b21285 0.85 -0.3 860,802 + SM_b21285 0.85 +0.2 860,803 - SM_b21285 0.85 -0.5 860,803 - SM_b21285 0.85 +0.4 860,829 + -0.3 860,835 + +1.2 860,836 - +0.5 860,844 + -1.3 860,845 - -0.7 860,845 - +0.2 861,240 - SM_b21286 0.25 +0.6 861,324 - SM_b21286 0.31 +0.0 861,681 - SM_b21286 0.55 +1.2 861,787 + SM_b21286 0.62 +0.3 861,993 - SM_b21286 0.76 -0.2 862,021 + SM_b21286 0.78 +0.4 862,022 - SM_b21286 0.78 +1.4 862,022 - SM_b21286 0.78 +0.5 862,340 - +1.0 862,340 - +0.9 862,343 + +0.8 862,343 + +1.0 862,343 + +0.8 862,343 + +0.5 862,343 + -0.7 862,344 - +0.1 862,344 - -0.8 862,455 + -0.6 862,456 - -0.0 862,457 + +0.0 862,457 + +0.2 862,457 + +0.2 862,457 + -0.5 862,458 - -0.8 862,458 - +0.5 862,459 + +0.3 862,459 + -0.0 862,460 - +0.1 862,466 + +0.0 862,467 - +0.1 862,497 + -0.2 862,600 + SM_b21287 0.10 -0.1 862,600 + SM_b21287 0.10 -0.5 862,600 + SM_b21287 0.10 +0.2 862,741 + SM_b21287 0.16 -0.2 862,741 + SM_b21287 0.16 -0.6 863,223 + SM_b21287 0.37 +0.3 863,223 + SM_b21287 0.37 -0.2 863,223 + SM_b21287 0.37 +0.4 863,223 + SM_b21287 0.37 +0.3 863,224 - SM_b21287 0.37 -0.1
Or see this region's nucleotide sequence