Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21172 and SM_b21173 are separated by 79 nucleotides SM_b21173 and SM_b21174 overlap by 4 nucleotides SM_b21174 and SM_b21175 are separated by 9 nucleotides
SM_b21172: SM_b21172 - hypothetical protein, at 918,536 to 919,345
_b21172
SM_b21173: SM_b21173 - hypothetical protein, at 919,425 to 919,616
_b21173
SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130
_b21174
SM_b21175: SM_b21175 - phosphate uptake ABC transporter permease, at 921,140 to 922,102
_b21175
Position (kb) 919
920
921
922 Strain fitness (log2 ratio) -2
-1
0
1 at 918.760 kb on + strand, within SM_b21172 at 918.761 kb on - strand, within SM_b21172 at 918.795 kb on + strand, within SM_b21172 at 918.796 kb on - strand, within SM_b21172 at 918.802 kb on - strand, within SM_b21172 at 918.996 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.272 kb on + strand at 919.501 kb on + strand, within SM_b21173 at 919.502 kb on - strand, within SM_b21173 at 919.517 kb on + strand, within SM_b21173 at 919.699 kb on + strand at 919.699 kb on + strand at 919.702 kb on - strand at 919.752 kb on - strand at 920.331 kb on + strand, within SM_b21174 at 920.908 kb on - strand, within SM_b21174 at 920.913 kb on - strand, within SM_b21174 at 920.929 kb on - strand, within SM_b21174 at 921.088 kb on + strand at 921.141 kb on + strand at 921.141 kb on + strand at 921.366 kb on + strand, within SM_b21175 at 921.756 kb on + strand, within SM_b21175 at 921.786 kb on + strand, within SM_b21175 at 921.811 kb on - strand, within SM_b21175 at 922.011 kb on + strand at 922.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 918,760 + SM_b21172 0.28 +0.0 918,761 - SM_b21172 0.28 +0.4 918,795 + SM_b21172 0.32 -0.7 918,796 - SM_b21172 0.32 +0.6 918,802 - SM_b21172 0.33 +0.0 918,996 + SM_b21172 0.57 +0.2 919,157 + SM_b21172 0.77 -0.1 919,157 + SM_b21172 0.77 -2.3 919,272 + -0.2 919,501 + SM_b21173 0.40 +0.2 919,502 - SM_b21173 0.40 -1.6 919,517 + SM_b21173 0.48 +0.9 919,699 + -0.4 919,699 + +1.2 919,702 - +1.2 919,752 - -2.1 920,331 + SM_b21174 0.47 -1.5 920,908 - SM_b21174 0.85 -2.0 920,913 - SM_b21174 0.86 -1.3 920,929 - SM_b21174 0.87 -0.4 921,088 + -2.5 921,141 + -0.8 921,141 + -0.2 921,366 + SM_b21175 0.23 -0.9 921,756 + SM_b21175 0.64 -2.1 921,786 + SM_b21175 0.67 +1.2 921,811 - SM_b21175 0.70 -1.5 922,011 + -1.3 922,085 - -1.2
Or see this region's nucleotide sequence