Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21148 and SM_b21149 are separated by 12 nucleotides SM_b21149 and SM_b21150 overlap by 4 nucleotides SM_b21150 and SM_b21151 are separated by 29 nucleotides
SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774
_b21148
SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671
_b21149
SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525
_b21150
SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784
_b21151
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 893.848 kb on - strand at 893.882 kb on + strand, within SM_b21149 at 893.949 kb on + strand, within SM_b21149 at 894.159 kb on + strand, within SM_b21149 at 894.160 kb on - strand, within SM_b21149 at 894.160 kb on - strand, within SM_b21149 at 894.160 kb on - strand, within SM_b21149 at 894.162 kb on - strand, within SM_b21149 at 894.306 kb on + strand, within SM_b21149 at 894.307 kb on - strand, within SM_b21149 at 894.307 kb on - strand, within SM_b21149 at 894.307 kb on - strand, within SM_b21149 at 894.345 kb on + strand, within SM_b21149 at 894.346 kb on - strand, within SM_b21149 at 894.381 kb on + strand, within SM_b21149 at 894.382 kb on - strand, within SM_b21149 at 894.538 kb on - strand, within SM_b21149 at 894.538 kb on - strand, within SM_b21149 at 894.599 kb on + strand at 894.627 kb on + strand at 894.627 kb on + strand at 894.704 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.783 kb on + strand, within SM_b21150 at 894.783 kb on + strand, within SM_b21150 at 894.783 kb on + strand, within SM_b21150 at 894.858 kb on - strand, within SM_b21150 at 894.858 kb on - strand, within SM_b21150 at 894.898 kb on + strand, within SM_b21150 at 894.899 kb on - strand, within SM_b21150 at 894.968 kb on + strand, within SM_b21150 at 894.968 kb on + strand, within SM_b21150 at 894.969 kb on - strand, within SM_b21150 at 895.104 kb on - strand, within SM_b21150 at 895.169 kb on + strand, within SM_b21150 at 895.169 kb on + strand, within SM_b21150 at 895.170 kb on - strand, within SM_b21150 at 895.232 kb on + strand, within SM_b21150 at 895.239 kb on + strand, within SM_b21150 at 895.240 kb on - strand, within SM_b21150 at 895.281 kb on + strand, within SM_b21150 at 895.281 kb on + strand, within SM_b21150 at 895.310 kb on + strand at 895.311 kb on - strand, within SM_b21150 at 895.358 kb on + strand, within SM_b21150 at 895.358 kb on + strand, within SM_b21150 at 895.359 kb on - strand, within SM_b21150 at 895.389 kb on - strand, within SM_b21150 at 895.485 kb on - strand at 895.524 kb on - strand at 895.534 kb on + strand at 895.560 kb on + strand at 895.561 kb on - strand at 895.561 kb on - strand at 895.561 kb on - strand at 895.576 kb on - strand at 895.660 kb on + strand at 895.684 kb on - strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.820 kb on - strand, within SM_b21151 at 895.906 kb on + strand, within SM_b21151 at 895.907 kb on - strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.960 kb on - strand, within SM_b21151 at 895.985 kb on - strand, within SM_b21151 at 896.158 kb on + strand, within SM_b21151 at 896.160 kb on + strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.388 kb on - strand, within SM_b21151
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 893,848 - -0.5 893,882 + SM_b21149 0.11 +1.2 893,949 + SM_b21149 0.18 +0.3 894,159 + SM_b21149 0.42 +0.9 894,160 - SM_b21149 0.42 +1.2 894,160 - SM_b21149 0.42 +1.4 894,160 - SM_b21149 0.42 -0.5 894,162 - SM_b21149 0.42 +0.2 894,306 + SM_b21149 0.59 -3.2 894,307 - SM_b21149 0.59 -1.3 894,307 - SM_b21149 0.59 -0.6 894,307 - SM_b21149 0.59 +0.1 894,345 + SM_b21149 0.63 +0.2 894,346 - SM_b21149 0.63 -1.4 894,381 + SM_b21149 0.67 -1.6 894,382 - SM_b21149 0.67 +0.4 894,538 - SM_b21149 0.85 -3.1 894,538 - SM_b21149 0.85 +0.5 894,599 + -0.2 894,627 + +1.0 894,627 + +0.5 894,704 + +0.4 894,722 + +0.4 894,722 + +0.3 894,722 + +0.3 894,722 + -0.3 894,722 + -0.6 894,783 + SM_b21150 0.13 -0.4 894,783 + SM_b21150 0.13 +0.9 894,783 + SM_b21150 0.13 +0.2 894,858 - SM_b21150 0.22 +1.4 894,858 - SM_b21150 0.22 +0.8 894,898 + SM_b21150 0.27 -0.2 894,899 - SM_b21150 0.27 +0.1 894,968 + SM_b21150 0.35 -0.5 894,968 + SM_b21150 0.35 +0.4 894,969 - SM_b21150 0.35 +0.2 895,104 - SM_b21150 0.51 +0.6 895,169 + SM_b21150 0.58 +0.9 895,169 + SM_b21150 0.58 +0.7 895,170 - SM_b21150 0.59 +0.2 895,232 + SM_b21150 0.66 +0.6 895,239 + SM_b21150 0.67 +0.0 895,240 - SM_b21150 0.67 +0.0 895,281 + SM_b21150 0.71 -0.2 895,281 + SM_b21150 0.71 +0.4 895,310 + +0.2 895,311 - SM_b21150 0.75 +0.1 895,358 + SM_b21150 0.80 -0.4 895,358 + SM_b21150 0.80 -0.1 895,359 - SM_b21150 0.81 -0.1 895,389 - SM_b21150 0.84 -1.0 895,485 - +0.3 895,524 - -0.2 895,534 + -1.0 895,560 + -0.7 895,561 - -0.6 895,561 - +0.3 895,561 - -0.4 895,576 - +0.2 895,660 + -1.7 895,684 - SM_b21151 0.10 +0.1 895,696 + SM_b21151 0.11 -0.2 895,696 + SM_b21151 0.11 +0.1 895,696 + SM_b21151 0.11 -0.1 895,696 + SM_b21151 0.11 -0.5 895,820 - SM_b21151 0.22 +1.5 895,906 + SM_b21151 0.29 -0.2 895,907 - SM_b21151 0.29 -0.8 895,914 + SM_b21151 0.29 -0.1 895,914 + SM_b21151 0.29 -0.1 895,960 - SM_b21151 0.33 +0.1 895,985 - SM_b21151 0.35 -0.1 896,158 + SM_b21151 0.49 -0.3 896,160 + SM_b21151 0.49 -0.1 896,161 - SM_b21151 0.49 +0.3 896,161 - SM_b21151 0.49 +0.0 896,194 - SM_b21151 0.52 +0.8 896,194 - SM_b21151 0.52 +0.7 896,194 - SM_b21151 0.52 +0.1 896,194 - SM_b21151 0.52 -0.5 896,236 + SM_b21151 0.55 +0.0 896,236 + SM_b21151 0.55 -0.5 896,236 + SM_b21151 0.55 +1.2 896,278 + SM_b21151 0.59 +0.1 896,278 + SM_b21151 0.59 +1.1 896,388 - SM_b21151 0.68 +0.0
Or see this region's nucleotide sequence