Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20903 and SM_b20904 are separated by 14 nucleotides SM_b20904 and SM_b21712 are separated by 181 nucleotides SM_b21712 and SM_b20905 are separated by 38 nucleotides
SM_b20903: SM_b20903 - sugar uptake ABC transporter permease, at 1,312,839 to 1,314,200
_b20903
SM_b20904: SM_b20904 - sugar uptake ABC transporter ATP-binding protein, at 1,314,215 to 1,315,000
_b20904
SM_b21712: SM_b21712 - tRNA-Arg, at 1,315,182 to 1,315,258
_b21712
SM_b20905: SM_b20905 - transposase, at 1,315,297 to 1,316,469
_b20905
Position (kb)
1314
1315
1316 Strain fitness (log2 ratio)
-2
-1
0
1 at 1313.227 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.570 kb on - strand, within SM_b20903 at 1313.589 kb on + strand, within SM_b20903 at 1313.589 kb on + strand, within SM_b20903 at 1313.649 kb on + strand, within SM_b20903 at 1313.650 kb on - strand, within SM_b20903 at 1313.653 kb on - strand, within SM_b20903 at 1313.653 kb on - strand, within SM_b20903 at 1313.679 kb on + strand, within SM_b20903 at 1313.680 kb on - strand, within SM_b20903 at 1313.814 kb on + strand, within SM_b20903 at 1313.988 kb on + strand, within SM_b20903 at 1313.988 kb on + strand, within SM_b20903 at 1313.988 kb on + strand, within SM_b20903 at 1314.180 kb on + strand at 1314.340 kb on + strand, within SM_b20904 at 1314.340 kb on + strand, within SM_b20904 at 1314.386 kb on + strand, within SM_b20904 at 1314.387 kb on - strand, within SM_b20904 at 1315.286 kb on + strand at 1315.287 kb on - strand at 1315.287 kb on - strand at 1315.298 kb on + strand at 1315.311 kb on + strand at 1315.311 kb on + strand at 1315.312 kb on - strand at 1315.312 kb on - strand at 1315.312 kb on - strand at 1315.376 kb on + strand at 1315.388 kb on + strand at 1315.389 kb on - strand at 1315.389 kb on - strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.411 kb on + strand at 1315.412 kb on - strand at 1315.412 kb on - strand at 1315.412 kb on - strand at 1315.412 kb on - strand at 1315.487 kb on + strand, within SM_b20905 at 1315.487 kb on + strand, within SM_b20905 at 1315.583 kb on + strand, within SM_b20905 at 1315.583 kb on + strand, within SM_b20905 at 1315.583 kb on + strand, within SM_b20905 at 1315.584 kb on - strand, within SM_b20905 at 1315.605 kb on + strand, within SM_b20905 at 1315.605 kb on + strand, within SM_b20905 at 1315.771 kb on - strand, within SM_b20905 at 1315.926 kb on - strand, within SM_b20905 at 1315.926 kb on - strand, within SM_b20905 at 1315.967 kb on + strand, within SM_b20905
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,313,227 - SM_b20903 0.28 -0.6 1,313,227 - SM_b20903 0.28 -0.3 1,313,227 - SM_b20903 0.28 +0.4 1,313,570 - SM_b20903 0.54 +0.9 1,313,589 + SM_b20903 0.55 +0.8 1,313,589 + SM_b20903 0.55 +0.2 1,313,649 + SM_b20903 0.59 -0.9 1,313,650 - SM_b20903 0.60 -0.1 1,313,653 - SM_b20903 0.60 -0.3 1,313,653 - SM_b20903 0.60 +0.5 1,313,679 + SM_b20903 0.62 +0.5 1,313,680 - SM_b20903 0.62 +0.6 1,313,814 + SM_b20903 0.72 -0.7 1,313,988 + SM_b20903 0.84 +0.1 1,313,988 + SM_b20903 0.84 -0.2 1,313,988 + SM_b20903 0.84 -0.2 1,314,180 + -0.3 1,314,340 + SM_b20904 0.16 -0.4 1,314,340 + SM_b20904 0.16 -1.0 1,314,386 + SM_b20904 0.22 -0.3 1,314,387 - SM_b20904 0.22 +1.3 1,315,286 + +0.2 1,315,287 - +0.9 1,315,287 - -0.0 1,315,298 + +0.0 1,315,311 + -0.4 1,315,311 + +0.1 1,315,312 - -1.9 1,315,312 - +1.1 1,315,312 - -1.2 1,315,376 + +0.1 1,315,388 + +0.4 1,315,389 - -0.1 1,315,389 - -0.4 1,315,411 + -0.4 1,315,411 + +0.0 1,315,411 + +0.0 1,315,411 + -0.8 1,315,411 + +0.1 1,315,411 + +0.1 1,315,412 - +0.2 1,315,412 - -0.0 1,315,412 - +0.1 1,315,412 - -0.9 1,315,487 + SM_b20905 0.16 -0.6 1,315,487 + SM_b20905 0.16 +0.6 1,315,583 + SM_b20905 0.24 +0.5 1,315,583 + SM_b20905 0.24 -0.4 1,315,583 + SM_b20905 0.24 -0.4 1,315,584 - SM_b20905 0.24 -0.7 1,315,605 + SM_b20905 0.26 -0.1 1,315,605 + SM_b20905 0.26 +0.3 1,315,771 - SM_b20905 0.40 -0.4 1,315,926 - SM_b20905 0.54 -1.2 1,315,926 - SM_b20905 0.54 -0.3 1,315,967 + SM_b20905 0.57 -0.8
Or see this region's nucleotide sequence