Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20891 and SM_b20892 are separated by 76 nucleotides SM_b20892 and SM_b20893 are separated by 146 nucleotides
SM_b20891: SM_b20891 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) , at 1,297,433 to 1,298,866
_b20891
SM_b20892: SM_b20892 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) , at 1,298,943 to 1,299,938
_b20892
SM_b20893: SM_b20893 - sugar uptake ABC transporter permease, at 1,300,085 to 1,301,299
_b20893
Position (kb)
1298
1299
1300 Strain fitness (log2 ratio)
-1
0
1
2 at 1298.139 kb on + strand, within SM_b20891 at 1298.139 kb on + strand, within SM_b20891 at 1298.140 kb on - strand, within SM_b20891 at 1298.770 kb on - strand at 1298.770 kb on - strand at 1298.803 kb on + strand at 1298.804 kb on - strand at 1298.939 kb on + strand at 1298.939 kb on + strand at 1298.940 kb on - strand at 1298.940 kb on - strand at 1298.940 kb on - strand at 1298.940 kb on - strand at 1299.033 kb on + strand at 1299.034 kb on - strand at 1299.249 kb on - strand, within SM_b20892 at 1299.249 kb on - strand, within SM_b20892 at 1299.326 kb on - strand, within SM_b20892 at 1299.412 kb on + strand, within SM_b20892 at 1299.412 kb on + strand, within SM_b20892 at 1299.412 kb on + strand, within SM_b20892 at 1299.412 kb on + strand, within SM_b20892 at 1299.413 kb on - strand, within SM_b20892 at 1299.413 kb on - strand, within SM_b20892 at 1299.511 kb on + strand, within SM_b20892 at 1299.511 kb on + strand, within SM_b20892 at 1299.511 kb on + strand, within SM_b20892 at 1299.511 kb on + strand, within SM_b20892 at 1299.512 kb on - strand, within SM_b20892 at 1299.512 kb on - strand, within SM_b20892 at 1299.587 kb on + strand, within SM_b20892 at 1299.587 kb on + strand, within SM_b20892 at 1299.588 kb on - strand, within SM_b20892 at 1299.742 kb on + strand, within SM_b20892 at 1299.742 kb on + strand, within SM_b20892 at 1299.838 kb on + strand, within SM_b20892 at 1299.838 kb on + strand, within SM_b20892 at 1299.839 kb on - strand at 1300.110 kb on + strand at 1300.110 kb on + strand at 1300.111 kb on - strand at 1300.111 kb on - strand at 1300.401 kb on + strand, within SM_b20893 at 1300.401 kb on + strand, within SM_b20893 at 1300.402 kb on - strand, within SM_b20893 at 1300.402 kb on - strand, within SM_b20893 at 1300.402 kb on - strand, within SM_b20893 at 1300.402 kb on - strand, within SM_b20893 at 1300.421 kb on - strand, within SM_b20893 at 1300.467 kb on + strand, within SM_b20893 at 1300.468 kb on - strand, within SM_b20893 at 1300.468 kb on - strand, within SM_b20893 at 1300.468 kb on - strand, within SM_b20893 at 1300.469 kb on + strand, within SM_b20893 at 1300.470 kb on - strand, within SM_b20893 at 1300.509 kb on + strand, within SM_b20893 at 1300.509 kb on + strand, within SM_b20893 at 1300.510 kb on - strand, within SM_b20893 at 1300.510 kb on - strand, within SM_b20893 at 1300.539 kb on - strand, within SM_b20893 at 1300.539 kb on - strand, within SM_b20893 at 1300.539 kb on - strand, within SM_b20893 at 1300.560 kb on + strand, within SM_b20893 at 1300.698 kb on + strand, within SM_b20893 at 1300.770 kb on + strand, within SM_b20893 at 1300.854 kb on + strand, within SM_b20893 at 1300.854 kb on + strand, within SM_b20893 at 1300.854 kb on + strand, within SM_b20893 at 1300.854 kb on + strand, within SM_b20893 at 1300.854 kb on + strand, within SM_b20893 at 1300.854 kb on + strand, within SM_b20893 at 1300.855 kb on - strand, within SM_b20893 at 1300.855 kb on - strand, within SM_b20893 at 1300.855 kb on - strand, within SM_b20893 at 1300.855 kb on - strand, within SM_b20893 at 1300.855 kb on - strand, within SM_b20893 at 1300.929 kb on + strand, within SM_b20893 at 1300.930 kb on - strand, within SM_b20893
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,298,139 + SM_b20891 0.49 +0.6 1,298,139 + SM_b20891 0.49 +1.0 1,298,140 - SM_b20891 0.49 +2.0 1,298,770 - +1.8 1,298,770 - -0.6 1,298,803 + +0.1 1,298,804 - -1.3 1,298,939 + +0.1 1,298,939 + +2.3 1,298,940 - +1.5 1,298,940 - +0.0 1,298,940 - -0.5 1,298,940 - +0.9 1,299,033 + +0.3 1,299,034 - +0.7 1,299,249 - SM_b20892 0.31 -0.3 1,299,249 - SM_b20892 0.31 +0.1 1,299,326 - SM_b20892 0.38 +0.0 1,299,412 + SM_b20892 0.47 +0.1 1,299,412 + SM_b20892 0.47 -0.4 1,299,412 + SM_b20892 0.47 -0.2 1,299,412 + SM_b20892 0.47 -0.1 1,299,413 - SM_b20892 0.47 +0.1 1,299,413 - SM_b20892 0.47 -0.2 1,299,511 + SM_b20892 0.57 +0.2 1,299,511 + SM_b20892 0.57 +1.3 1,299,511 + SM_b20892 0.57 -0.6 1,299,511 + SM_b20892 0.57 +0.8 1,299,512 - SM_b20892 0.57 -0.3 1,299,512 - SM_b20892 0.57 -0.2 1,299,587 + SM_b20892 0.65 +0.2 1,299,587 + SM_b20892 0.65 -1.2 1,299,588 - SM_b20892 0.65 +0.4 1,299,742 + SM_b20892 0.80 -0.1 1,299,742 + SM_b20892 0.80 -0.2 1,299,838 + SM_b20892 0.90 -0.1 1,299,838 + SM_b20892 0.90 -0.3 1,299,839 - +0.0 1,300,110 + -0.4 1,300,110 + -0.7 1,300,111 - -0.3 1,300,111 - -1.2 1,300,401 + SM_b20893 0.26 -0.1 1,300,401 + SM_b20893 0.26 +0.0 1,300,402 - SM_b20893 0.26 -1.6 1,300,402 - SM_b20893 0.26 +0.7 1,300,402 - SM_b20893 0.26 -0.1 1,300,402 - SM_b20893 0.26 +0.5 1,300,421 - SM_b20893 0.28 +0.9 1,300,467 + SM_b20893 0.31 -0.0 1,300,468 - SM_b20893 0.32 -0.1 1,300,468 - SM_b20893 0.32 +0.7 1,300,468 - SM_b20893 0.32 +0.1 1,300,469 + SM_b20893 0.32 -1.5 1,300,470 - SM_b20893 0.32 +0.2 1,300,509 + SM_b20893 0.35 -0.0 1,300,509 + SM_b20893 0.35 -0.2 1,300,510 - SM_b20893 0.35 -0.3 1,300,510 - SM_b20893 0.35 -0.3 1,300,539 - SM_b20893 0.37 -0.2 1,300,539 - SM_b20893 0.37 -0.4 1,300,539 - SM_b20893 0.37 -0.8 1,300,560 + SM_b20893 0.39 -0.5 1,300,698 + SM_b20893 0.50 +0.2 1,300,770 + SM_b20893 0.56 -0.5 1,300,854 + SM_b20893 0.63 +0.0 1,300,854 + SM_b20893 0.63 -0.7 1,300,854 + SM_b20893 0.63 +0.6 1,300,854 + SM_b20893 0.63 -0.1 1,300,854 + SM_b20893 0.63 -1.1 1,300,854 + SM_b20893 0.63 +0.5 1,300,855 - SM_b20893 0.63 +1.9 1,300,855 - SM_b20893 0.63 -0.2 1,300,855 - SM_b20893 0.63 -0.1 1,300,855 - SM_b20893 0.63 +0.2 1,300,855 - SM_b20893 0.63 -0.1 1,300,929 + SM_b20893 0.69 -0.0 1,300,930 - SM_b20893 0.70 -0.3
Or see this region's nucleotide sequence