Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20292 and SM_b20293 are separated by 311 nucleotides SM_b20293 and SM_b20294 are separated by 131 nucleotides SM_b20294 and SM_b20295 are separated by 28 nucleotides
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
Position (kb)
301
302 Strain fitness (log2 ratio)
-2
-1
0
1 at 300.258 kb on + strand, within SM_b20292 at 300.262 kb on - strand, within SM_b20292 at 300.374 kb on - strand at 300.374 kb on - strand at 300.394 kb on - strand at 300.394 kb on - strand at 300.440 kb on + strand at 300.441 kb on - strand at 300.528 kb on + strand at 300.528 kb on + strand at 300.529 kb on - strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.586 kb on - strand at 300.713 kb on + strand at 300.714 kb on - strand at 300.718 kb on + strand at 300.752 kb on - strand, within SM_b20293 at 300.849 kb on + strand, within SM_b20293 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294 at 301.871 kb on + strand at 301.872 kb on - strand at 301.872 kb on - strand at 301.876 kb on - strand at 301.907 kb on + strand at 302.022 kb on + strand, within SM_b20295 at 302.130 kb on + strand, within SM_b20295 at 302.242 kb on + strand, within SM_b20295 at 302.243 kb on - strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 300,258 + SM_b20292 0.86 +0.1 300,262 - SM_b20292 0.87 -0.1 300,374 - +0.1 300,374 - -0.5 300,394 - -0.3 300,394 - +0.1 300,440 + +0.3 300,441 - +0.2 300,528 + +0.4 300,528 + +1.2 300,529 - -0.0 300,560 + +0.0 300,560 + +0.3 300,561 - +0.3 300,586 - +0.3 300,713 + -0.2 300,714 - +0.3 300,718 + +1.2 300,752 - SM_b20293 0.14 -0.2 300,849 + SM_b20293 0.41 -0.4 301,060 + +0.0 301,061 - -0.1 301,061 - -0.2 301,273 - SM_b20294 0.11 -1.4 301,357 - SM_b20294 0.23 +0.1 301,871 + +0.0 301,872 - -0.3 301,872 - +0.4 301,876 - -0.1 301,907 + -0.9 302,022 + SM_b20295 0.10 +0.3 302,130 + SM_b20295 0.21 +0.7 302,242 + SM_b20295 0.33 +0.5 302,243 - SM_b20295 0.33 -0.2 302,451 + SM_b20295 0.54 +0.2 302,451 + SM_b20295 0.54 -1.2 302,452 - SM_b20295 0.54 -1.8 302,452 - SM_b20295 0.54 -1.9 302,452 - SM_b20295 0.54 -0.5 302,506 + SM_b20295 0.60 +0.2 302,506 + SM_b20295 0.60 -0.5 302,506 + SM_b20295 0.60 -0.6 302,507 - SM_b20295 0.60 +0.1 302,507 - SM_b20295 0.60 +1.0 302,833 + +0.4
Or see this region's nucleotide sequence