Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20291 and SM_b20292 are separated by 187 nucleotides SM_b20292 and SM_b20293 are separated by 311 nucleotides SM_b20293 and SM_b20294 are separated by 131 nucleotides
SM_b20291: SM_b20291 - hypothetical protein, at 296,737 to 299,220
_b20291
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
Position (kb)
299
300
301 Strain fitness (log2 ratio)
-2
-1
0
1 at 298.832 kb on + strand, within SM_b20291 at 298.832 kb on + strand, within SM_b20291 at 299.193 kb on - strand at 299.237 kb on - strand at 299.237 kb on - strand at 299.356 kb on + strand at 299.356 kb on + strand at 299.409 kb on + strand at 299.409 kb on + strand at 299.409 kb on + strand at 299.433 kb on + strand at 299.568 kb on + strand, within SM_b20292 at 299.652 kb on + strand, within SM_b20292 at 299.686 kb on - strand, within SM_b20292 at 299.770 kb on + strand, within SM_b20292 at 299.797 kb on - strand, within SM_b20292 at 300.008 kb on + strand, within SM_b20292 at 300.103 kb on - strand, within SM_b20292 at 300.258 kb on + strand, within SM_b20292 at 300.262 kb on - strand, within SM_b20292 at 300.374 kb on - strand at 300.374 kb on - strand at 300.394 kb on - strand at 300.394 kb on - strand at 300.440 kb on + strand at 300.441 kb on - strand at 300.528 kb on + strand at 300.528 kb on + strand at 300.529 kb on - strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.586 kb on - strand at 300.713 kb on + strand at 300.714 kb on - strand at 300.718 kb on + strand at 300.752 kb on - strand, within SM_b20293 at 300.849 kb on + strand, within SM_b20293 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 298,832 + SM_b20291 0.84 +0.0 298,832 + SM_b20291 0.84 +0.4 299,193 - +0.1 299,237 - -0.5 299,237 - -0.0 299,356 + -2.4 299,356 + +0.0 299,409 + +0.0 299,409 + -0.1 299,409 + +0.2 299,433 + -0.2 299,568 + SM_b20292 0.16 +0.3 299,652 + SM_b20292 0.25 +0.3 299,686 - SM_b20292 0.28 -0.4 299,770 + SM_b20292 0.37 +1.1 299,797 - SM_b20292 0.40 +1.4 300,008 + SM_b20292 0.61 +0.2 300,103 - SM_b20292 0.71 -0.2 300,258 + SM_b20292 0.86 +0.1 300,262 - SM_b20292 0.87 -0.1 300,374 - +0.1 300,374 - -0.5 300,394 - -0.3 300,394 - +0.1 300,440 + +0.3 300,441 - +0.2 300,528 + +0.4 300,528 + +1.2 300,529 - -0.0 300,560 + +0.0 300,560 + +0.3 300,561 - +0.3 300,586 - +0.3 300,713 + -0.2 300,714 - +0.3 300,718 + +1.2 300,752 - SM_b20293 0.14 -0.2 300,849 + SM_b20293 0.41 -0.4 301,060 + +0.0 301,061 - -0.1 301,061 - -0.2 301,273 - SM_b20294 0.11 -1.4 301,357 - SM_b20294 0.23 +0.1
Or see this region's nucleotide sequence