Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20266

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20264 and SM_b20265 are separated by 12 nucleotidesSM_b20265 and SM_b20266 overlap by 8 nucleotidesSM_b20266 and SM_b20267 are separated by 0 nucleotides SM_b20264: SM_b20264 - amino acid ABC transporter permease, at 269,391 to 270,056 _b20264 SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722 _b20265 SM_b20266: SM_b20266 - amino acid ABC transporter ATP-binding protein, at 270,715 to 271,437 _b20266 SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679 _b20267 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 269.988 kb on + strand, within SM_b20264at 269.988 kb on + strand, within SM_b20264at 269.989 kb on - strand, within SM_b20264at 269.991 kb on + strandat 269.992 kb on - strandat 270.214 kb on - strand, within SM_b20265at 270.358 kb on - strand, within SM_b20265at 270.514 kb on + strand, within SM_b20265at 270.515 kb on - strand, within SM_b20265at 270.596 kb on - strand, within SM_b20265at 270.596 kb on - strand, within SM_b20265at 270.651 kb on + strand, within SM_b20265at 270.652 kb on - strand, within SM_b20265at 270.652 kb on - strand, within SM_b20265at 271.183 kb on + strand, within SM_b20266at 271.183 kb on + strand, within SM_b20266at 271.184 kb on - strand, within SM_b20266at 271.185 kb on + strand, within SM_b20266at 271.185 kb on + strand, within SM_b20266at 271.185 kb on + strand, within SM_b20266at 271.185 kb on + strand, within SM_b20266at 271.186 kb on - strand, within SM_b20266at 271.186 kb on - strand, within SM_b20266at 271.186 kb on - strand, within SM_b20266at 271.186 kb on - strand, within SM_b20266at 271.186 kb on - strand, within SM_b20266at 271.186 kb on - strand, within SM_b20266at 271.435 kb on + strandat 271.596 kb on + strand, within SM_b20267at 271.864 kb on + strand, within SM_b20267at 272.001 kb on + strand, within SM_b20267at 272.045 kb on - strand, within SM_b20267at 272.266 kb on - strand, within SM_b20267

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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269,988 + SM_b20264 0.90 -0.1
269,988 + SM_b20264 0.90 +1.3
269,989 - SM_b20264 0.90 -0.3
269,991 + +0.3
269,992 - -0.1
270,214 - SM_b20265 0.22 -0.4
270,358 - SM_b20265 0.44 -0.7
270,514 + SM_b20265 0.68 +0.0
270,515 - SM_b20265 0.68 +2.2
270,596 - SM_b20265 0.81 +0.3
270,596 - SM_b20265 0.81 +0.7
270,651 + SM_b20265 0.89 -0.5
270,652 - SM_b20265 0.89 -2.2
270,652 - SM_b20265 0.89 -0.1
271,183 + SM_b20266 0.65 +0.3
271,183 + SM_b20266 0.65 +0.1
271,184 - SM_b20266 0.65 +0.4
271,185 + SM_b20266 0.65 -0.4
271,185 + SM_b20266 0.65 -0.1
271,185 + SM_b20266 0.65 +1.4
271,185 + SM_b20266 0.65 +0.1
271,186 - SM_b20266 0.65 -0.1
271,186 - SM_b20266 0.65 -0.2
271,186 - SM_b20266 0.65 +0.0
271,186 - SM_b20266 0.65 +0.2
271,186 - SM_b20266 0.65 -0.5
271,186 - SM_b20266 0.65 -1.3
271,435 + +0.0
271,596 + SM_b20267 0.13 -0.1
271,864 + SM_b20267 0.34 +0.2
272,001 + SM_b20267 0.45 -0.3
272,045 - SM_b20267 0.49 +1.0
272,266 - SM_b20267 0.67 +0.5

Or see this region's nucleotide sequence