Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20200 and SM_b20201 are separated by 10 nucleotides SM_b20201 and SM_b20202 are separated by 10 nucleotides
SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426
_b20200
SM_b20201: SM_b20201 - phosphoribulokinase, at 210,437 to 211,306
_b20201
SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366
_b20202
Position (kb) 210
211
212 Strain fitness (log2 ratio) -1
0
1
2 at 209.952 kb on - strand, within SM_b20200 at 210.083 kb on + strand, within SM_b20200 at 210.148 kb on - strand, within SM_b20200 at 210.179 kb on + strand, within SM_b20200 at 210.552 kb on + strand, within SM_b20201 at 210.552 kb on + strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.658 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.733 kb on - strand, within SM_b20201 at 210.839 kb on + strand, within SM_b20201 at 211.017 kb on + strand, within SM_b20201 at 211.018 kb on - strand, within SM_b20201 at 211.223 kb on + strand at 211.307 kb on - strand at 211.307 kb on - strand at 211.565 kb on + strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.568 kb on - strand, within SM_b20202 at 211.711 kb on + strand, within SM_b20202 at 211.711 kb on + strand, within SM_b20202 at 211.742 kb on - strand, within SM_b20202 at 211.799 kb on - strand, within SM_b20202 at 211.799 kb on - strand, within SM_b20202 at 211.888 kb on + strand, within SM_b20202 at 211.888 kb on + strand, within SM_b20202 at 211.889 kb on - strand, within SM_b20202 at 212.010 kb on - strand, within SM_b20202 at 212.104 kb on + strand, within SM_b20202 at 212.104 kb on + strand, within SM_b20202 at 212.146 kb on - strand, within SM_b20202
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 209,952 - SM_b20200 0.77 -0.9 210,083 + SM_b20200 0.84 +0.6 210,148 - SM_b20200 0.87 -0.3 210,179 + SM_b20200 0.88 +0.1 210,552 + SM_b20201 0.13 +0.2 210,552 + SM_b20201 0.13 +1.3 210,553 - SM_b20201 0.13 +0.1 210,553 - -0.1 210,553 - SM_b20201 0.13 +0.3 210,553 - SM_b20201 0.13 +0.5 210,553 - SM_b20201 0.13 +1.0 210,553 - SM_b20201 0.13 -0.1 210,658 + SM_b20201 0.25 -0.1 210,730 + SM_b20201 0.34 +0.5 210,730 + SM_b20201 0.34 -0.1 210,730 + SM_b20201 0.34 -0.1 210,731 - SM_b20201 0.34 +0.4 210,731 - SM_b20201 0.34 -0.4 210,732 + SM_b20201 0.34 +0.0 210,732 + SM_b20201 0.34 -0.1 210,732 + SM_b20201 0.34 -0.7 210,733 - SM_b20201 0.34 +0.9 210,839 + SM_b20201 0.46 +0.5 211,017 + SM_b20201 0.67 +2.5 211,018 - SM_b20201 0.67 +0.4 211,223 + +0.4 211,307 - +0.3 211,307 - +0.0 211,565 + SM_b20202 0.24 +0.7 211,566 - SM_b20202 0.24 +0.2 211,566 - SM_b20202 0.24 -0.0 211,566 - SM_b20202 0.24 +0.3 211,568 - SM_b20202 0.24 +0.5 211,711 + SM_b20202 0.38 -0.5 211,711 + SM_b20202 0.38 +0.7 211,742 - SM_b20202 0.40 +2.5 211,799 - SM_b20202 0.46 +0.3 211,799 - SM_b20202 0.46 -0.0 211,888 + SM_b20202 0.54 +0.9 211,888 + SM_b20202 0.54 -0.2 211,889 - SM_b20202 0.54 -0.4 212,010 - SM_b20202 0.66 -0.3 212,104 + SM_b20202 0.75 -0.3 212,104 + SM_b20202 0.75 +0.9 212,146 - SM_b20202 0.79 +0.9
Or see this region's nucleotide sequence