Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20097 and SM_b20098 are separated by 8 nucleotides SM_b20098 and SM_b20099 overlap by 4 nucleotides SM_b20099 and SM_b20100 are separated by 1 nucleotides
SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724
_b20097
SM_b20098: SM_b20098 - hypothetical protein, at 106,733 to 107,128
_b20098
SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759
_b20099
SM_b20100: SM_b20100 - dehydrogenase, at 108,761 to 109,747
_b20100
Position (kb)
107
108
109 Strain fitness (log2 ratio)
-2
-1
0
1 at 106.236 kb on + strand, within SM_b20097 at 106.437 kb on + strand, within SM_b20097 at 106.473 kb on + strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.496 kb on - strand, within SM_b20097 at 106.698 kb on + strand at 106.714 kb on + strand at 106.715 kb on - strand at 106.732 kb on + strand at 106.909 kb on + strand, within SM_b20098 at 106.911 kb on - strand, within SM_b20098 at 107.021 kb on - strand, within SM_b20098 at 107.041 kb on + strand, within SM_b20098 at 107.161 kb on + strand at 107.161 kb on + strand at 107.161 kb on + strand at 107.162 kb on - strand at 107.162 kb on - strand at 107.219 kb on + strand at 107.219 kb on + strand at 107.220 kb on - strand at 107.220 kb on - strand at 107.242 kb on + strand at 107.242 kb on + strand at 107.242 kb on + strand at 107.243 kb on - strand at 107.251 kb on + strand at 107.251 kb on + strand at 107.252 kb on - strand at 107.329 kb on + strand, within SM_b20099 at 107.330 kb on - strand, within SM_b20099 at 107.330 kb on - strand, within SM_b20099 at 107.332 kb on + strand, within SM_b20099 at 107.332 kb on + strand, within SM_b20099 at 107.501 kb on - strand, within SM_b20099 at 107.503 kb on + strand, within SM_b20099 at 107.584 kb on + strand, within SM_b20099 at 107.585 kb on - strand, within SM_b20099 at 107.605 kb on + strand, within SM_b20099 at 107.608 kb on + strand, within SM_b20099 at 107.609 kb on - strand, within SM_b20099 at 107.609 kb on - strand, within SM_b20099 at 107.745 kb on - strand, within SM_b20099 at 107.745 kb on - strand, within SM_b20099 at 107.762 kb on + strand, within SM_b20099 at 107.763 kb on - strand, within SM_b20099 at 108.133 kb on + strand, within SM_b20099 at 108.134 kb on - strand, within SM_b20099 at 108.134 kb on - strand, within SM_b20099 at 108.192 kb on - strand, within SM_b20099 at 108.575 kb on + strand, within SM_b20099 at 108.992 kb on + strand, within SM_b20100 at 109.233 kb on - strand, within SM_b20100 at 109.424 kb on + strand, within SM_b20100 at 109.425 kb on - strand, within SM_b20100 at 109.528 kb on - strand, within SM_b20100 at 109.571 kb on + strand, within SM_b20100 at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 106,236 + SM_b20097 0.60 +0.0 106,437 + SM_b20097 0.77 -0.2 106,473 + SM_b20097 0.80 -1.2 106,474 - SM_b20097 0.80 +0.5 106,474 - SM_b20097 0.80 +0.1 106,474 - SM_b20097 0.80 +0.5 106,496 - SM_b20097 0.81 -0.3 106,698 + -0.1 106,714 + -0.2 106,715 - -0.8 106,732 + -0.3 106,909 + SM_b20098 0.44 -0.9 106,911 - SM_b20098 0.45 +0.4 107,021 - SM_b20098 0.73 +0.2 107,041 + SM_b20098 0.78 +0.3 107,161 + -0.2 107,161 + +0.2 107,161 + -0.2 107,162 - +0.0 107,162 - -0.5 107,219 + -0.0 107,219 + -0.1 107,220 - +1.0 107,220 - -0.9 107,242 + -2.1 107,242 + -0.7 107,242 + -1.5 107,243 - -0.7 107,251 + -0.2 107,251 + +0.3 107,252 - +0.1 107,329 + SM_b20099 0.12 -0.2 107,330 - SM_b20099 0.13 -0.7 107,330 - SM_b20099 0.13 -0.6 107,332 + SM_b20099 0.13 +0.4 107,332 + SM_b20099 0.13 +1.1 107,501 - SM_b20099 0.23 +0.3 107,503 + SM_b20099 0.23 -0.4 107,584 + SM_b20099 0.28 -0.1 107,585 - SM_b20099 0.28 -0.2 107,605 + SM_b20099 0.29 -0.7 107,608 + SM_b20099 0.30 +0.2 107,609 - SM_b20099 0.30 -0.1 107,609 - SM_b20099 0.30 -0.1 107,745 - SM_b20099 0.38 +1.3 107,745 - SM_b20099 0.38 -0.3 107,762 + SM_b20099 0.39 +0.4 107,763 - SM_b20099 0.39 -0.3 108,133 + SM_b20099 0.62 +0.1 108,134 - SM_b20099 0.62 -0.4 108,134 - SM_b20099 0.62 +0.2 108,192 - SM_b20099 0.65 -0.5 108,575 + SM_b20099 0.89 -0.1 108,992 + SM_b20100 0.23 -0.1 109,233 - SM_b20100 0.48 +0.5 109,424 + SM_b20100 0.67 +0.1 109,425 - SM_b20100 0.67 -1.6 109,528 - SM_b20100 0.78 +0.1 109,571 + SM_b20100 0.82 +0.0 109,649 + -0.4 109,649 + +0.2 109,649 + -0.2 109,649 + +0.5 109,649 + -0.1 109,650 - -0.8
Or see this region's nucleotide sequence