Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20083 and SM_b20084 are separated by 111 nucleotides SM_b20084 and SM_b20085 are separated by 51 nucleotides SM_b20085 and SM_b20086 are separated by 197 nucleotides SM_b20086 and SM_b20087 are separated by 22 nucleotides SM_b20087 and SM_b20088 are separated by 154 nucleotides
SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791
_b20083
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774
_b20086
SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402
_b20087
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
Position (kb)
95
96 Strain fitness (log2 ratio)
-2
-1
0
1 at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.715 kb on - strand, within SM_b20083 at 94.829 kb on + strand at 94.830 kb on - strand at 94.856 kb on - strand at 94.904 kb on + strand at 94.904 kb on + strand at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.970 kb on + strand, within SM_b20084 at 94.979 kb on - strand, within SM_b20084 at 95.036 kb on - strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.058 kb on + strand, within SM_b20084 at 95.076 kb on + strand at 95.077 kb on - strand at 95.260 kb on + strand at 95.268 kb on + strand at 95.269 kb on - strand at 95.694 kb on - strand, within SM_b20086 at 95.694 kb on - strand, within SM_b20086 at 95.716 kb on - strand, within SM_b20086 at 95.762 kb on - strand at 95.828 kb on - strand at 95.887 kb on - strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.943 kb on - strand, within SM_b20087 at 96.029 kb on + strand, within SM_b20087 at 96.030 kb on - strand, within SM_b20087 at 96.281 kb on + strand, within SM_b20087 at 96.282 kb on - strand, within SM_b20087 at 96.303 kb on + strand, within SM_b20087 at 96.348 kb on + strand at 96.349 kb on - strand at 96.512 kb on + strand at 96.513 kb on - strand at 96.513 kb on - strand at 96.749 kb on + strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 94,551 + -0.2 94,551 + -0.1 94,551 + +0.3 94,551 + +0.1 94,552 - +0.2 94,552 - -0.9 94,552 - -0.1 94,714 + SM_b20083 0.68 -0.1 94,714 + SM_b20083 0.68 -1.0 94,714 + SM_b20083 0.68 -0.0 94,715 - SM_b20083 0.68 -0.5 94,829 + -1.0 94,830 - -0.9 94,856 - -0.4 94,904 + +0.9 94,904 + +1.3 94,957 - SM_b20084 0.31 -0.3 94,957 - SM_b20084 0.31 -0.1 94,957 - SM_b20084 0.31 -0.0 94,957 - SM_b20084 0.31 -0.6 94,970 + SM_b20084 0.39 -0.7 94,979 - SM_b20084 0.44 +0.2 95,036 - SM_b20084 0.76 +1.4 95,046 + SM_b20084 0.82 +0.5 95,046 + SM_b20084 0.82 +0.5 95,046 + SM_b20084 0.82 +0.4 95,058 + SM_b20084 0.89 -0.3 95,076 + -0.3 95,077 - -0.9 95,260 + -0.0 95,268 + -0.3 95,269 - -1.1 95,694 - SM_b20086 0.73 -1.3 95,694 - SM_b20086 0.73 +1.1 95,716 - SM_b20086 0.81 -2.0 95,762 - +0.3 95,828 - +0.5 95,887 - SM_b20087 0.15 -1.5 95,942 + SM_b20087 0.24 +0.0 95,942 + SM_b20087 0.24 +0.1 95,943 - SM_b20087 0.24 -0.7 96,029 + SM_b20087 0.38 +0.0 96,030 - SM_b20087 0.38 +0.1 96,281 + SM_b20087 0.80 +0.5 96,282 - SM_b20087 0.80 -0.5 96,303 + SM_b20087 0.83 -0.1 96,348 + +0.9 96,349 - +0.4 96,512 + -0.3 96,513 - +0.1 96,513 - -0.0 96,749 + -0.5 96,750 - -0.3 96,750 - -1.0 96,750 - -0.2 96,750 - -0.1 96,751 + +0.8 96,751 + -0.0 96,752 - +0.7 96,752 - -0.2 96,752 - +0.0
Or see this region's nucleotide sequence