Experiment: KB with Diallyl sulfide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4562 and Psyr_4563 are separated by 7 nucleotides Psyr_4563 and Psyr_4564 overlap by 11 nucleotides Psyr_4564 and Psyr_RNA70 are separated by 101 nucleotides Psyr_RNA70 and Psyr_RNA71 are separated by 149 nucleotides
Psyr_4562: Psyr_4562 - conserved domain protein, at 5,420,743 to 5,421,171
_4562
Psyr_4563: Psyr_4563 - Bvg accessory factor, at 5,421,179 to 5,421,928
_4563
Psyr_4564: Psyr_4564 - Biotin--acetyl-CoA-carboxylase ligase, at 5,421,918 to 5,422,925
_4564
Psyr_RNA70: Psyr_RNA70 - 5S ribosomal RNA, at 5,423,027 to 5,423,141
_RNA70
Psyr_RNA71: Psyr_RNA71 - 23S ribosomal RNA, at 5,423,291 to 5,426,193
_RNA71
Position (kb) 5421
5422
5423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5420.981 kb on + strand, within Psyr_4562 at 5420.981 kb on + strand, within Psyr_4562 at 5420.982 kb on - strand, within Psyr_4562 at 5421.057 kb on + strand, within Psyr_4562 at 5421.058 kb on - strand, within Psyr_4562 at 5421.060 kb on + strand, within Psyr_4562 at 5421.060 kb on + strand, within Psyr_4562 at 5421.061 kb on - strand, within Psyr_4562 at 5421.125 kb on + strand, within Psyr_4562 at 5421.125 kb on + strand, within Psyr_4562 at 5421.125 kb on + strand, within Psyr_4562 at 5421.125 kb on + strand, within Psyr_4562 at 5421.125 kb on + strand, within Psyr_4562 at 5421.126 kb on - strand, within Psyr_4562 at 5421.128 kb on + strand, within Psyr_4562 at 5421.128 kb on + strand, within Psyr_4562 at 5421.128 kb on + strand, within Psyr_4562 at 5421.129 kb on - strand at 5421.138 kb on + strand at 5421.138 kb on + strand at 5421.160 kb on + strand at 5421.160 kb on + strand at 5421.161 kb on - strand at 5421.172 kb on - strand at 5422.693 kb on - strand, within Psyr_4564 at 5422.693 kb on - strand, within Psyr_4564 at 5422.693 kb on - strand, within Psyr_4564 at 5422.693 kb on - strand, within Psyr_4564 at 5422.693 kb on - strand, within Psyr_4564 at 5422.693 kb on - strand, within Psyr_4564 at 5422.719 kb on - strand, within Psyr_4564 at 5422.719 kb on - strand, within Psyr_4564 at 5422.719 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.750 kb on - strand, within Psyr_4564 at 5422.777 kb on - strand, within Psyr_4564 at 5422.777 kb on - strand, within Psyr_4564 at 5422.804 kb on - strand, within Psyr_4564 at 5422.822 kb on - strand, within Psyr_4564 at 5422.825 kb on - strand at 5422.825 kb on - strand at 5422.825 kb on - strand at 5422.825 kb on - strand at 5422.933 kb on - strand at 5422.933 kb on - strand at 5422.933 kb on - strand at 5422.933 kb on - strand at 5422.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Diallyl sulfide 10 mM remove 5,420,981 + Psyr_4562 0.55 -0.8 5,420,981 + Psyr_4562 0.55 -0.8 5,420,982 - Psyr_4562 0.56 +0.6 5,421,057 + Psyr_4562 0.73 -2.3 5,421,058 - Psyr_4562 0.73 +0.9 5,421,060 + Psyr_4562 0.74 +1.2 5,421,060 + Psyr_4562 0.74 +0.6 5,421,061 - Psyr_4562 0.74 +0.5 5,421,125 + Psyr_4562 0.89 -0.4 5,421,125 + Psyr_4562 0.89 -0.6 5,421,125 + Psyr_4562 0.89 -0.7 5,421,125 + Psyr_4562 0.89 +0.7 5,421,125 + Psyr_4562 0.89 +0.3 5,421,126 - Psyr_4562 0.89 +0.4 5,421,128 + Psyr_4562 0.90 +0.1 5,421,128 + Psyr_4562 0.90 -1.3 5,421,128 + Psyr_4562 0.90 -0.9 5,421,129 - +0.3 5,421,138 + +0.2 5,421,138 + -0.3 5,421,160 + +1.7 5,421,160 + +0.4 5,421,161 - +0.8 5,421,172 - -1.1 5,422,693 - Psyr_4564 0.77 -1.0 5,422,693 - Psyr_4564 0.77 -1.8 5,422,693 - Psyr_4564 0.77 -1.5 5,422,693 - Psyr_4564 0.77 -1.3 5,422,693 - Psyr_4564 0.77 +0.2 5,422,693 - Psyr_4564 0.77 +1.2 5,422,719 - Psyr_4564 0.79 -1.5 5,422,719 - Psyr_4564 0.79 -2.3 5,422,719 - Psyr_4564 0.79 -0.0 5,422,750 - Psyr_4564 0.83 -3.1 5,422,750 - Psyr_4564 0.83 -0.3 5,422,750 - Psyr_4564 0.83 -0.9 5,422,750 - Psyr_4564 0.83 +2.1 5,422,750 - Psyr_4564 0.83 -0.2 5,422,750 - Psyr_4564 0.83 +0.0 5,422,750 - Psyr_4564 0.83 -0.9 5,422,750 - Psyr_4564 0.83 -1.3 5,422,750 - +1.2 5,422,750 - Psyr_4564 0.83 -2.0 5,422,750 - Psyr_4564 0.83 -0.6 5,422,750 - Psyr_4564 0.83 -1.6 5,422,750 - Psyr_4564 0.83 -0.6 5,422,750 - Psyr_4564 0.83 -0.8 5,422,750 - Psyr_4564 0.83 -0.1 5,422,777 - Psyr_4564 0.85 -1.1 5,422,777 - Psyr_4564 0.85 -0.2 5,422,804 - Psyr_4564 0.88 +0.3 5,422,822 - Psyr_4564 0.90 +1.1 5,422,825 - -0.1 5,422,825 - +0.5 5,422,825 - +0.5 5,422,825 - +0.4 5,422,933 - +0.9 5,422,933 - -3.0 5,422,933 - -1.5 5,422,933 - +2.5 5,422,972 - -1.6
Or see this region's nucleotide sequence