Experiment: KB with Diallyl sulfide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4078 and Psyr_4079 are separated by 28 nucleotides Psyr_4079 and Psyr_4080 are separated by 312 nucleotides
Psyr_4078: Psyr_4078 - AmpG-related permease, at 4,860,930 to 4,862,480
_4078
Psyr_4079: Psyr_4079 - conserved hypothetical protein, at 4,862,509 to 4,862,841
_4079
Psyr_4080: Psyr_4080 - Rhs element Vgr protein, at 4,863,154 to 4,865,715
_4080
Position (kb) 4862
4863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.687 kb on - strand, within Psyr_4078 at 4861.777 kb on - strand, within Psyr_4078 at 4861.909 kb on - strand, within Psyr_4078 at 4861.953 kb on + strand, within Psyr_4078 at 4861.954 kb on - strand, within Psyr_4078 at 4861.954 kb on - strand, within Psyr_4078 at 4861.971 kb on - strand, within Psyr_4078 at 4862.168 kb on + strand, within Psyr_4078 at 4862.224 kb on - strand, within Psyr_4078 at 4862.265 kb on + strand, within Psyr_4078 at 4862.266 kb on - strand, within Psyr_4078 at 4862.316 kb on + strand, within Psyr_4078 at 4862.425 kb on + strand at 4862.425 kb on + strand at 4862.426 kb on - strand at 4862.426 kb on - strand at 4862.426 kb on - strand at 4862.609 kb on - strand, within Psyr_4079 at 4862.609 kb on - strand, within Psyr_4079 at 4862.609 kb on - strand, within Psyr_4079 at 4862.713 kb on + strand, within Psyr_4079 at 4862.714 kb on - strand, within Psyr_4079 at 4862.727 kb on - strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.809 kb on - strand at 4862.815 kb on - strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.827 kb on - strand at 4862.827 kb on - strand at 4862.827 kb on - strand at 4862.827 kb on - strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.889 kb on + strand at 4862.890 kb on - strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.907 kb on + strand at 4862.965 kb on - strand at 4863.002 kb on + strand at 4863.002 kb on + strand at 4863.003 kb on - strand at 4863.003 kb on - strand at 4863.003 kb on - strand at 4863.003 kb on - strand at 4863.023 kb on + strand at 4863.024 kb on - strand at 4863.054 kb on + strand at 4863.080 kb on + strand at 4863.081 kb on - strand at 4863.081 kb on - strand at 4863.081 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.103 kb on - strand at 4863.137 kb on + strand at 4863.138 kb on - strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.141 kb on + strand at 4863.142 kb on - strand at 4863.142 kb on - strand at 4863.158 kb on + strand at 4863.159 kb on - strand at 4863.167 kb on + strand at 4863.365 kb on + strand at 4863.365 kb on + strand at 4863.366 kb on - strand at 4863.366 kb on - strand at 4863.392 kb on - strand at 4863.392 kb on - strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.405 kb on + strand at 4863.405 kb on + strand at 4863.405 kb on + strand at 4863.451 kb on + strand, within Psyr_4080 at 4863.509 kb on + strand, within Psyr_4080 at 4863.509 kb on + strand, within Psyr_4080 at 4863.510 kb on - strand, within Psyr_4080 at 4863.510 kb on - strand, within Psyr_4080 at 4863.549 kb on - strand, within Psyr_4080 at 4863.549 kb on - strand, within Psyr_4080 at 4863.559 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.653 kb on + strand, within Psyr_4080 at 4863.654 kb on - strand, within Psyr_4080 at 4863.654 kb on - strand, within Psyr_4080 at 4863.654 kb on - strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Diallyl sulfide 10 mM remove 4,861,686 + Psyr_4078 0.49 -1.6 4,861,686 + Psyr_4078 0.49 -0.6 4,861,686 + Psyr_4078 0.49 -1.8 4,861,686 + Psyr_4078 0.49 +0.3 4,861,687 - Psyr_4078 0.49 -0.6 4,861,777 - Psyr_4078 0.55 -0.6 4,861,909 - Psyr_4078 0.63 -0.8 4,861,953 + Psyr_4078 0.66 -1.3 4,861,954 - Psyr_4078 0.66 -0.6 4,861,954 - Psyr_4078 0.66 -0.9 4,861,971 - Psyr_4078 0.67 +4.2 4,862,168 + Psyr_4078 0.80 +1.0 4,862,224 - Psyr_4078 0.83 +1.6 4,862,265 + Psyr_4078 0.86 +2.2 4,862,266 - Psyr_4078 0.86 -0.4 4,862,316 + Psyr_4078 0.89 +1.0 4,862,425 + -0.4 4,862,425 + +2.6 4,862,426 - +0.4 4,862,426 - -0.8 4,862,426 - -1.3 4,862,609 - Psyr_4079 0.30 +1.1 4,862,609 - Psyr_4079 0.30 +0.6 4,862,609 - Psyr_4079 0.30 +0.3 4,862,713 + Psyr_4079 0.61 -0.9 4,862,714 - Psyr_4079 0.62 -0.2 4,862,727 - Psyr_4079 0.65 -0.5 4,862,753 + Psyr_4079 0.73 +1.2 4,862,753 + Psyr_4079 0.73 -0.9 4,862,753 + Psyr_4079 0.73 -0.1 4,862,753 + Psyr_4079 0.73 +2.0 4,862,753 + Psyr_4079 0.73 -2.3 4,862,753 + +2.0 4,862,753 + Psyr_4079 0.73 +0.3 4,862,753 + Psyr_4079 0.73 +1.0 4,862,753 + Psyr_4079 0.73 +1.1 4,862,753 + Psyr_4079 0.73 -0.4 4,862,754 - Psyr_4079 0.74 -1.7 4,862,754 - Psyr_4079 0.74 +0.0 4,862,754 - Psyr_4079 0.74 -2.5 4,862,754 - Psyr_4079 0.74 +1.6 4,862,754 - Psyr_4079 0.74 +1.5 4,862,754 - Psyr_4079 0.74 -0.5 4,862,754 - Psyr_4079 0.74 -1.8 4,862,754 - Psyr_4079 0.74 +2.1 4,862,754 - Psyr_4079 0.74 -0.9 4,862,754 - Psyr_4079 0.74 +0.1 4,862,757 + Psyr_4079 0.74 +2.4 4,862,757 + Psyr_4079 0.74 +1.0 4,862,757 + Psyr_4079 0.74 +1.0 4,862,757 + Psyr_4079 0.74 +1.0 4,862,757 + Psyr_4079 0.74 -0.0 4,862,757 + Psyr_4079 0.74 +1.0 4,862,758 - Psyr_4079 0.75 -0.6 4,862,758 - Psyr_4079 0.75 +0.3 4,862,758 - Psyr_4079 0.75 +1.5 4,862,758 - Psyr_4079 0.75 +1.5 4,862,758 - Psyr_4079 0.75 +0.1 4,862,758 - Psyr_4079 0.75 -0.9 4,862,758 - Psyr_4079 0.75 +2.0 4,862,758 - Psyr_4079 0.75 +0.0 4,862,758 - Psyr_4079 0.75 +0.6 4,862,809 - +0.2 4,862,815 - -0.1 4,862,826 + +0.3 4,862,826 + +0.6 4,862,826 + +0.0 4,862,826 + -0.2 4,862,826 + -0.9 4,862,827 - +1.8 4,862,827 - -0.2 4,862,827 - +0.2 4,862,827 - +0.9 4,862,828 + +0.2 4,862,828 + -2.4 4,862,828 + -1.3 4,862,828 + -0.9 4,862,828 + +0.2 4,862,828 + +2.3 4,862,828 + -0.5 4,862,828 + -1.1 4,862,828 + -1.2 4,862,828 + +0.1 4,862,828 + +2.8 4,862,829 - +0.6 4,862,829 - -0.6 4,862,829 - +0.6 4,862,829 - -0.0 4,862,829 - -0.4 4,862,829 - -0.4 4,862,829 - -0.4 4,862,829 - +1.0 4,862,829 - +0.6 4,862,829 - -0.6 4,862,889 + -1.8 4,862,890 - +2.0 4,862,891 + +0.7 4,862,891 + -0.5 4,862,891 + +0.5 4,862,891 + +0.3 4,862,891 + +1.0 4,862,891 + +1.3 4,862,891 + -1.2 4,862,891 + -0.8 4,862,891 + -1.1 4,862,891 + -0.6 4,862,892 - +0.6 4,862,892 - -0.3 4,862,892 - +1.0 4,862,892 - -1.3 4,862,892 - -0.3 4,862,892 - +0.0 4,862,892 - -1.0 4,862,892 - -1.1 4,862,892 - +0.3 4,862,907 + +1.5 4,862,965 - +0.6 4,863,002 + +0.3 4,863,002 + -0.5 4,863,003 - +0.9 4,863,003 - +0.1 4,863,003 - +0.4 4,863,003 - -1.0 4,863,023 + -2.2 4,863,024 - -0.4 4,863,054 + -1.2 4,863,080 + -1.3 4,863,081 - +0.3 4,863,081 - +0.1 4,863,081 - +0.8 4,863,083 - -0.2 4,863,083 - -1.9 4,863,083 - -0.4 4,863,083 - -0.7 4,863,083 - -0.3 4,863,083 - -0.4 4,863,100 + +0.7 4,863,100 + -3.0 4,863,100 + +3.0 4,863,100 + -0.1 4,863,100 + +0.8 4,863,100 + -0.6 4,863,101 - +2.6 4,863,101 - -0.6 4,863,101 - -1.2 4,863,101 - -1.8 4,863,101 - -1.6 4,863,103 - +2.5 4,863,137 + +2.4 4,863,138 - -0.9 4,863,139 + -0.6 4,863,139 + +0.7 4,863,139 + -0.2 4,863,139 + -1.2 4,863,139 + +1.0 4,863,140 - +0.7 4,863,140 - -1.2 4,863,140 - -1.4 4,863,140 - -2.0 4,863,140 - -0.6 4,863,141 + +1.6 4,863,142 - +0.8 4,863,142 - +0.4 4,863,158 + +1.0 4,863,159 - +0.8 4,863,167 + -0.2 4,863,365 + -2.0 4,863,365 + +0.4 4,863,366 - +0.8 4,863,366 - +0.6 4,863,392 - +0.0 4,863,392 - +0.7 4,863,403 + -0.3 4,863,403 + +1.4 4,863,403 + -1.5 4,863,403 + +0.1 4,863,403 + -0.4 4,863,403 + +0.8 4,863,404 - -2.2 4,863,404 - +0.4 4,863,404 - +1.3 4,863,404 - +0.5 4,863,404 - -0.2 4,863,404 - +1.0 4,863,405 + +0.4 4,863,405 + +0.0 4,863,405 + -1.7 4,863,451 + Psyr_4080 0.12 +0.3 4,863,509 + Psyr_4080 0.14 -1.4 4,863,509 + Psyr_4080 0.14 +0.7 4,863,510 - Psyr_4080 0.14 -0.4 4,863,510 - Psyr_4080 0.14 -0.5 4,863,549 - Psyr_4080 0.15 -0.3 4,863,549 - Psyr_4080 0.15 -1.0 4,863,559 + Psyr_4080 0.16 -0.3 4,863,616 + Psyr_4080 0.18 +1.2 4,863,616 + Psyr_4080 0.18 +0.2 4,863,616 + Psyr_4080 0.18 -2.5 4,863,616 + Psyr_4080 0.18 -1.1 4,863,616 + Psyr_4080 0.18 +0.6 4,863,616 + Psyr_4080 0.18 +1.2 4,863,616 + Psyr_4080 0.18 +0.1 4,863,616 + Psyr_4080 0.18 -1.2 4,863,616 + Psyr_4080 0.18 +0.9 4,863,616 + Psyr_4080 0.18 -0.1 4,863,616 + Psyr_4080 0.18 -0.8 4,863,616 + Psyr_4080 0.18 +2.0 4,863,616 + Psyr_4080 0.18 +0.5 4,863,616 + Psyr_4080 0.18 +0.6 4,863,616 + Psyr_4080 0.18 -1.9 4,863,616 + Psyr_4080 0.18 +0.0 4,863,616 + Psyr_4080 0.18 +0.6 4,863,616 + Psyr_4080 0.18 +1.0 4,863,616 + Psyr_4080 0.18 -1.3 4,863,617 - Psyr_4080 0.18 +0.5 4,863,617 - Psyr_4080 0.18 -1.0 4,863,617 - Psyr_4080 0.18 +1.3 4,863,617 - Psyr_4080 0.18 +0.8 4,863,617 - Psyr_4080 0.18 -0.3 4,863,617 - Psyr_4080 0.18 -0.5 4,863,617 - Psyr_4080 0.18 -0.4 4,863,617 - Psyr_4080 0.18 +1.6 4,863,617 - Psyr_4080 0.18 +0.6 4,863,617 - Psyr_4080 0.18 +0.8 4,863,617 - Psyr_4080 0.18 +0.2 4,863,653 + Psyr_4080 0.19 +0.7 4,863,654 - Psyr_4080 0.20 -0.2 4,863,654 - Psyr_4080 0.20 -1.7 4,863,654 - Psyr_4080 0.20 +1.0 4,863,688 + Psyr_4080 0.21 +0.5 4,863,688 + Psyr_4080 0.21 -0.5 4,863,688 + Psyr_4080 0.21 -0.4 4,863,688 + Psyr_4080 0.21 -0.0 4,863,689 - Psyr_4080 0.21 +3.5 4,863,689 - Psyr_4080 0.21 -3.7 4,863,689 - Psyr_4080 0.21 -0.8 4,863,689 - Psyr_4080 0.21 +1.7
Or see this region's nucleotide sequence