Experiment: KB with Diallyl sulfide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4075 and Psyr_4076 are separated by 54 nucleotides Psyr_4076 and Psyr_4077 are separated by 158 nucleotides Psyr_4077 and Psyr_4078 are separated by 54 nucleotides
Psyr_4075: Psyr_4075 - Short-chain dehydrogenase/reductase SDR, at 4,858,540 to 4,859,298
_4075
Psyr_4076: Psyr_4076 - conserved hypothetical protein, at 4,859,353 to 4,860,360
_4076
Psyr_4077: Psyr_4077 - Methylated-DNA-[protein]-cysteine S-methyltransferase, at 4,860,519 to 4,860,875
_4077
Psyr_4078: Psyr_4078 - AmpG-related permease, at 4,860,930 to 4,862,480
_4078
Position (kb) 4859
4860
4861 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4858.362 kb on + strand at 4858.362 kb on + strand at 4858.410 kb on + strand at 4858.411 kb on - strand at 4858.411 kb on - strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.460 kb on - strand at 4858.480 kb on + strand at 4858.480 kb on + strand at 4858.480 kb on + strand at 4858.480 kb on + strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.540 kb on - strand at 4858.563 kb on - strand at 4858.610 kb on - strand at 4858.610 kb on - strand at 4858.714 kb on + strand, within Psyr_4075 at 4858.715 kb on - strand, within Psyr_4075 at 4858.715 kb on - strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.981 kb on - strand, within Psyr_4075 at 4859.023 kb on + strand, within Psyr_4075 at 4859.023 kb on + strand, within Psyr_4075 at 4859.023 kb on + strand, within Psyr_4075 at 4859.024 kb on - strand, within Psyr_4075 at 4859.024 kb on - strand, within Psyr_4075 at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.236 kb on - strand at 4859.236 kb on - strand at 4859.236 kb on - strand at 4859.236 kb on - strand at 4859.252 kb on - strand at 4859.296 kb on + strand at 4859.296 kb on + strand at 4859.355 kb on - strand at 4859.362 kb on + strand at 4859.382 kb on - strand at 4859.382 kb on - strand at 4859.382 kb on - strand at 4859.471 kb on + strand, within Psyr_4076 at 4859.471 kb on + strand, within Psyr_4076 at 4859.472 kb on - strand, within Psyr_4076 at 4859.574 kb on - strand, within Psyr_4076 at 4859.582 kb on + strand, within Psyr_4076 at 4859.583 kb on - strand, within Psyr_4076 at 4859.606 kb on + strand, within Psyr_4076 at 4859.606 kb on + strand, within Psyr_4076 at 4859.607 kb on - strand, within Psyr_4076 at 4859.607 kb on - strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.763 kb on - strand, within Psyr_4076 at 4859.763 kb on - strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.871 kb on - strand, within Psyr_4076 at 4859.871 kb on - strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.216 kb on - strand, within Psyr_4076 at 4860.216 kb on - strand, within Psyr_4076 at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.361 kb on - strand at 4860.361 kb on - strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.380 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.503 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.541 kb on + strand at 4860.542 kb on - strand at 4860.542 kb on - strand at 4860.592 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.690 kb on - strand, within Psyr_4077 at 4860.805 kb on + strand, within Psyr_4077 at 4860.845 kb on + strand at 4860.873 kb on + strand at 4860.873 kb on + strand at 4860.966 kb on + strand at 4860.986 kb on - strand at 4860.991 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Diallyl sulfide 10 mM remove 4,858,362 + -1.0 4,858,362 + -0.2 4,858,410 + +0.5 4,858,411 - -0.6 4,858,411 - -1.7 4,858,457 + +0.1 4,858,457 + +0.9 4,858,457 + +1.7 4,858,457 + +0.7 4,858,457 + +0.2 4,858,457 + +0.7 4,858,457 + +0.5 4,858,457 + +1.2 4,858,457 + +0.7 4,858,458 - -1.0 4,858,458 - -0.0 4,858,458 - -0.5 4,858,458 - +0.5 4,858,458 - +0.4 4,858,458 - -0.3 4,858,458 - -0.2 4,858,458 - -1.0 4,858,458 - +0.5 4,858,458 - +0.0 4,858,458 - -2.6 4,858,458 - +0.5 4,858,458 - +0.4 4,858,458 - +1.0 4,858,458 - +2.0 4,858,458 - +0.5 4,858,460 - +3.3 4,858,480 + -0.4 4,858,480 + -0.9 4,858,480 + -1.6 4,858,480 + -0.4 4,858,481 - +2.0 4,858,481 - +2.0 4,858,481 - -0.3 4,858,481 - +1.0 4,858,481 - +0.7 4,858,481 - +0.5 4,858,540 - -0.3 4,858,563 - +1.2 4,858,610 - +0.1 4,858,610 - -0.2 4,858,714 + Psyr_4075 0.23 -2.0 4,858,715 - Psyr_4075 0.23 -0.2 4,858,715 - Psyr_4075 0.23 +0.2 4,858,980 + Psyr_4075 0.58 +1.2 4,858,980 + Psyr_4075 0.58 -0.3 4,858,980 + Psyr_4075 0.58 -0.6 4,858,980 + Psyr_4075 0.58 -0.4 4,858,981 - Psyr_4075 0.58 -0.1 4,859,023 + Psyr_4075 0.64 -0.7 4,859,023 + Psyr_4075 0.64 -1.3 4,859,023 + Psyr_4075 0.64 -0.4 4,859,024 - Psyr_4075 0.64 +0.4 4,859,024 - Psyr_4075 0.64 +0.6 4,859,233 + +0.8 4,859,233 + +0.8 4,859,233 + +1.0 4,859,233 + +1.1 4,859,233 + +1.9 4,859,233 + +1.0 4,859,233 + +0.3 4,859,233 + +1.6 4,859,234 - +0.9 4,859,234 - +0.6 4,859,234 - -0.1 4,859,234 - +0.4 4,859,234 - -0.8 4,859,234 - +0.2 4,859,234 - -0.3 4,859,234 - +1.4 4,859,234 - +0.9 4,859,234 - -1.0 4,859,234 - +0.0 4,859,234 - -0.4 4,859,234 - -0.9 4,859,234 - -0.3 4,859,235 + +0.5 4,859,235 + -0.3 4,859,235 + +0.6 4,859,235 + +2.2 4,859,235 + -0.6 4,859,235 + -0.3 4,859,235 + -1.2 4,859,235 + -0.1 4,859,235 + -0.6 4,859,236 - +0.3 4,859,236 - -0.1 4,859,236 - -0.9 4,859,236 - -0.7 4,859,252 - -0.7 4,859,296 + -0.5 4,859,296 + -0.6 4,859,355 - +1.2 4,859,362 + +0.8 4,859,382 - +0.2 4,859,382 - -0.9 4,859,382 - +1.1 4,859,471 + Psyr_4076 0.12 -0.2 4,859,471 + Psyr_4076 0.12 +1.3 4,859,472 - Psyr_4076 0.12 +1.0 4,859,574 - Psyr_4076 0.22 +0.8 4,859,582 + Psyr_4076 0.23 +3.3 4,859,583 - Psyr_4076 0.23 +0.3 4,859,606 + Psyr_4076 0.25 -0.5 4,859,606 + Psyr_4076 0.25 +1.3 4,859,607 - Psyr_4076 0.25 +1.2 4,859,607 - Psyr_4076 0.25 +0.6 4,859,762 + Psyr_4076 0.41 +0.3 4,859,762 + Psyr_4076 0.41 +0.9 4,859,762 + Psyr_4076 0.41 -1.1 4,859,762 + Psyr_4076 0.41 +0.8 4,859,762 + Psyr_4076 0.41 -0.4 4,859,763 - Psyr_4076 0.41 +0.1 4,859,763 - Psyr_4076 0.41 +1.7 4,859,870 + Psyr_4076 0.51 -0.7 4,859,870 + Psyr_4076 0.51 +1.0 4,859,870 + Psyr_4076 0.51 +0.6 4,859,870 + Psyr_4076 0.51 -0.6 4,859,870 + Psyr_4076 0.51 -1.3 4,859,871 - Psyr_4076 0.51 +1.0 4,859,871 - Psyr_4076 0.51 -0.6 4,859,933 + Psyr_4076 0.58 +0.1 4,859,933 + Psyr_4076 0.58 -0.1 4,859,933 + Psyr_4076 0.58 +3.6 4,859,934 - Psyr_4076 0.58 +0.6 4,859,934 - Psyr_4076 0.58 +1.0 4,859,934 - Psyr_4076 0.58 +1.0 4,860,039 + Psyr_4076 0.68 +0.1 4,860,039 + Psyr_4076 0.68 +1.5 4,860,039 + Psyr_4076 0.68 -0.4 4,860,040 - Psyr_4076 0.68 +0.4 4,860,040 - Psyr_4076 0.68 +0.5 4,860,040 - Psyr_4076 0.68 -1.6 4,860,040 - Psyr_4076 0.68 +0.4 4,860,040 - Psyr_4076 0.68 +0.0 4,860,216 - Psyr_4076 0.86 -0.5 4,860,216 - Psyr_4076 0.86 -0.4 4,860,360 + +0.6 4,860,360 + +1.0 4,860,360 + -0.8 4,860,360 + -0.6 4,860,360 + +0.2 4,860,360 + -0.9 4,860,361 - -0.6 4,860,361 - +0.9 4,860,371 + -3.2 4,860,371 + -1.7 4,860,371 + +1.1 4,860,371 + -0.2 4,860,371 + -0.8 4,860,371 + +1.4 4,860,371 + -1.6 4,860,372 - +1.4 4,860,372 - -0.4 4,860,372 - -0.1 4,860,372 - -1.2 4,860,372 - +0.5 4,860,372 - +1.8 4,860,372 - +1.3 4,860,372 - +1.7 4,860,372 - -0.5 4,860,380 + -1.2 4,860,432 + +0.1 4,860,432 + +0.4 4,860,432 + +1.4 4,860,432 + -0.9 4,860,432 + -0.0 4,860,432 + -0.2 4,860,433 - -0.4 4,860,433 - +1.0 4,860,433 - +0.4 4,860,433 - +1.2 4,860,433 - +1.7 4,860,433 - +0.1 4,860,433 - -2.5 4,860,503 + +1.3 4,860,535 + -1.0 4,860,535 + -1.2 4,860,535 + -0.2 4,860,535 + -0.4 4,860,535 + +1.3 4,860,536 - +3.1 4,860,536 - -0.4 4,860,536 - +0.8 4,860,536 - +0.3 4,860,541 + +0.8 4,860,542 - +0.5 4,860,542 - -0.3 4,860,592 - Psyr_4077 0.20 +2.0 4,860,653 - Psyr_4077 0.38 +1.7 4,860,653 - Psyr_4077 0.38 -0.6 4,860,653 - Psyr_4077 0.38 +0.7 4,860,653 - Psyr_4077 0.38 +0.1 4,860,690 - Psyr_4077 0.48 +0.6 4,860,805 + Psyr_4077 0.80 -0.1 4,860,845 + +0.0 4,860,873 + +0.6 4,860,873 + +0.4 4,860,966 + +0.9 4,860,986 - -1.0 4,860,991 + +0.2 4,861,023 + -1.6 4,861,023 + -0.1 4,861,023 + -0.4 4,861,023 + -0.7 4,861,023 + -3.9 4,861,023 + +1.0 4,861,024 - -0.1 4,861,024 - -0.4 4,861,024 - -1.5 4,861,024 - +0.7 4,861,024 - +0.3 4,861,024 - -1.0 4,861,024 - +0.5 4,861,024 - -1.6 4,861,024 - +0.0 4,861,024 - -0.8 4,861,025 + +0.5 4,861,025 + +1.3 4,861,025 + -0.7 4,861,025 + +2.0 4,861,025 + +0.0 4,861,025 + +0.2 4,861,025 + -0.6 4,861,025 + -0.7 4,861,025 + +0.5 4,861,025 + -0.2 4,861,025 + -0.3 4,861,025 + -0.3 4,861,025 + +1.2 4,861,025 + +3.3 4,861,025 + +1.4 4,861,025 + -0.2 4,861,025 + -1.4 4,861,025 + -1.3 4,861,026 - -2.9 4,861,026 - +1.6 4,861,026 - -1.3 4,861,026 - +1.0 4,861,026 - -0.1 4,861,026 - +1.0 4,861,026 - +1.2 4,861,026 - -0.3 4,861,026 - -0.1 4,861,026 - +2.3 4,861,026 - +0.0 4,861,026 - -2.0 4,861,026 - -2.1 4,861,026 - -1.0 4,861,026 - -0.8 4,861,026 - -1.1 4,861,026 - -0.6 4,861,026 - +0.9 4,861,026 - -0.7 4,861,026 - -1.2 4,861,026 - -1.3 4,861,124 + Psyr_4078 0.13 -0.8 4,861,124 + Psyr_4078 0.13 +0.2 4,861,124 + Psyr_4078 0.13 +0.6 4,861,124 + Psyr_4078 0.13 +0.9 4,861,125 - Psyr_4078 0.13 +0.3 4,861,125 - Psyr_4078 0.13 -0.9 4,861,125 - Psyr_4078 0.13 +0.0
Or see this region's nucleotide sequence