Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1654

Experiment: KB with Diallyl sulfide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1653 and Psyr_1654 are separated by 34 nucleotidesPsyr_1654 and Psyr_1655 are separated by 14 nucleotides Psyr_1653: Psyr_1653 - DNA polymerase III, delta prime subunit, at 1,857,645 to 1,858,631 _1653 Psyr_1654: Psyr_1654 - Type IV pilus assembly PilZ, at 1,858,666 to 1,859,022 _1654 Psyr_1655: Psyr_1655 - TatD-related deoxyribonuclease, at 1,859,037 to 1,859,822 _1655 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1858.629 kb on + strandat 1858.629 kb on + strandat 1858.695 kb on + strandat 1858.696 kb on - strandat 1858.738 kb on + strand, within Psyr_1654at 1858.739 kb on - strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.761 kb on + strand, within Psyr_1654at 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.032 kb on - strandat 1859.032 kb on - strandat 1859.044 kb on + strandat 1859.044 kb on + strandat 1859.044 kb on + strandat 1859.044 kb on + strandat 1859.045 kb on - strandat 1859.045 kb on - strandat 1859.045 kb on - strandat 1859.335 kb on - strand, within Psyr_1655at 1859.335 kb on - strand, within Psyr_1655at 1859.340 kb on + strand, within Psyr_1655at 1859.341 kb on - strand, within Psyr_1655at 1859.551 kb on - strand, within Psyr_1655at 1859.551 kb on - strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.658 kb on + strand, within Psyr_1655at 1859.703 kb on + strand, within Psyr_1655at 1859.703 kb on + strand, within Psyr_1655at 1859.704 kb on - strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.708 kb on - strand, within Psyr_1655at 1859.708 kb on - strand, within Psyr_1655at 1859.751 kb on + strandat 1859.751 kb on + strandat 1859.910 kb on - strandat 1859.910 kb on - strandat 1859.943 kb on - strandat 1859.943 kb on - strandat 1859.983 kb on + strandat 1859.983 kb on + strandat 1859.984 kb on - strandat 1859.987 kb on + strandat 1859.987 kb on + strandat 1859.987 kb on + strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1859.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Diallyl sulfide 10 mM
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1,858,629 + +0.1
1,858,629 + -0.3
1,858,695 + +0.2
1,858,696 - -2.0
1,858,738 + Psyr_1654 0.20 +1.1
1,858,739 - Psyr_1654 0.20 -0.7
1,858,747 + Psyr_1654 0.23 -0.1
1,858,747 + Psyr_1654 0.23 -1.3
1,858,747 + Psyr_1654 0.23 -0.1
1,858,747 + Psyr_1654 0.23 -1.8
1,858,747 + Psyr_1654 0.23 -1.6
1,858,747 + Psyr_1654 0.23 -0.5
1,858,747 + Psyr_1654 0.23 -0.0
1,858,747 + Psyr_1654 0.23 -0.1
1,858,747 + Psyr_1654 0.23 -0.2
1,858,747 + Psyr_1654 0.23 +0.4
1,858,747 + Psyr_1654 0.23 -2.5
1,858,748 - Psyr_1654 0.23 -0.2
1,858,748 - Psyr_1654 0.23 -1.3
1,858,748 - Psyr_1654 0.23 +1.0
1,858,748 - Psyr_1654 0.23 +0.4
1,858,748 - Psyr_1654 0.23 -1.6
1,858,748 - Psyr_1654 0.23 +0.5
1,858,748 - Psyr_1654 0.23 -0.5
1,858,748 - Psyr_1654 0.23 +0.1
1,858,748 - Psyr_1654 0.23 +0.5
1,858,748 - Psyr_1654 0.23 -1.1
1,858,748 - Psyr_1654 0.23 +0.4
1,858,748 - Psyr_1654 0.23 -0.9
1,858,748 - Psyr_1654 0.23 +1.5
1,858,748 - Psyr_1654 0.23 +0.4
1,858,748 - Psyr_1654 0.23 -1.5
1,858,748 - Psyr_1654 0.23 -1.0
1,858,748 - Psyr_1654 0.23 -1.2
1,858,748 - Psyr_1654 0.23 -0.0
1,858,748 - Psyr_1654 0.23 -0.5
1,858,748 - Psyr_1654 0.23 +0.8
1,858,748 - Psyr_1654 0.23 +0.5
1,858,749 + Psyr_1654 0.23 -0.6
1,858,749 + Psyr_1654 0.23 -1.5
1,858,749 + Psyr_1654 0.23 +0.1
1,858,749 + Psyr_1654 0.23 -0.2
1,858,749 + Psyr_1654 0.23 +1.2
1,858,750 - Psyr_1654 0.24 +0.8
1,858,750 - Psyr_1654 0.24 -0.7
1,858,750 - Psyr_1654 0.24 -0.6
1,858,750 - Psyr_1654 0.24 -1.3
1,858,750 - Psyr_1654 0.24 +0.5
1,858,761 + Psyr_1654 0.27 -0.7
1,859,020 + -1.4
1,859,020 + +1.4
1,859,020 + +1.5
1,859,020 + -0.6
1,859,020 + +1.4
1,859,020 + +2.1
1,859,020 + -0.6
1,859,020 + +1.7
1,859,020 + +0.1
1,859,020 + +2.7
1,859,020 + -0.8
1,859,020 + +1.1
1,859,020 + +0.2
1,859,021 - +0.3
1,859,021 - -2.5
1,859,021 - +1.5
1,859,021 - -0.5
1,859,021 - +0.1
1,859,021 - -1.8
1,859,021 - -0.2
1,859,032 - +0.1
1,859,032 - +1.4
1,859,044 + +0.7
1,859,044 + +0.2
1,859,044 + -0.5
1,859,044 + -0.1
1,859,045 - -0.4
1,859,045 - +0.7
1,859,045 - -0.1
1,859,335 - Psyr_1655 0.38 -0.0
1,859,335 - Psyr_1655 0.38 +0.5
1,859,340 + Psyr_1655 0.39 +0.4
1,859,341 - Psyr_1655 0.39 -1.1
1,859,551 - Psyr_1655 0.65 +0.1
1,859,551 - Psyr_1655 0.65 -1.1
1,859,553 + Psyr_1655 0.66 -1.2
1,859,553 + Psyr_1655 0.66 +0.5
1,859,553 + Psyr_1655 0.66 +1.3
1,859,554 - Psyr_1655 0.66 +0.9
1,859,554 - Psyr_1655 0.66 +1.0
1,859,554 - Psyr_1655 0.66 -0.1
1,859,554 - Psyr_1655 0.66 -0.0
1,859,658 + Psyr_1655 0.79 +0.4
1,859,703 + Psyr_1655 0.85 +0.7
1,859,703 + Psyr_1655 0.85 +1.4
1,859,704 - Psyr_1655 0.85 +2.7
1,859,707 + Psyr_1655 0.85 +0.3
1,859,707 + Psyr_1655 0.85 +1.7
1,859,707 + Psyr_1655 0.85 -0.4
1,859,707 + Psyr_1655 0.85 -1.0
1,859,707 + Psyr_1655 0.85 -0.8
1,859,707 + Psyr_1655 0.85 -0.3
1,859,708 - Psyr_1655 0.85 +0.4
1,859,708 - Psyr_1655 0.85 -0.1
1,859,751 + -0.3
1,859,751 + +1.5
1,859,910 - +1.0
1,859,910 - -3.2
1,859,943 - -0.1
1,859,943 - -1.9
1,859,983 + +0.2
1,859,983 + -0.6
1,859,984 - +0.5
1,859,987 + +1.9
1,859,987 + -0.0
1,859,987 + -0.4
1,859,988 - -0.1
1,859,988 - -0.2
1,859,988 - -1.0
1,859,988 - +2.2

Or see this region's nucleotide sequence