Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1583

Experiment: KB with Diallyl sulfide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1582 and Psyr_1583 are separated by 126 nucleotidesPsyr_1583 and Psyr_1584 are separated by 175 nucleotides Psyr_1582: Psyr_1582 - conserved hypothetical protein, at 1,776,635 to 1,777,702 _1582 Psyr_1583: Psyr_1583 - cysteine synthase, at 1,777,829 to 1,778,803 _1583 Psyr_1584: Psyr_1584 - Aspartyl/Asparaginyl beta-hydroxylase, at 1,778,979 to 1,779,917 _1584 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.909 kb on - strand, within Psyr_1582at 1776.909 kb on - strand, within Psyr_1582at 1776.909 kb on - strand, within Psyr_1582at 1776.912 kb on + strand, within Psyr_1582at 1776.912 kb on + strand, within Psyr_1582at 1776.912 kb on + strand, within Psyr_1582at 1776.913 kb on - strand, within Psyr_1582at 1777.181 kb on - strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.241 kb on - strand, within Psyr_1582at 1777.241 kb on - strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.289 kb on - strand, within Psyr_1582at 1777.289 kb on - strand, within Psyr_1582at 1777.289 kb on - strand, within Psyr_1582at 1777.572 kb on + strand, within Psyr_1582at 1777.605 kb on + strandat 1777.605 kb on + strandat 1777.605 kb on + strandat 1777.606 kb on - strandat 1777.656 kb on - strandat 1777.656 kb on - strandat 1777.689 kb on + strandat 1777.788 kb on + strandat 1777.841 kb on + strandat 1777.841 kb on + strandat 1777.841 kb on + strandat 1777.842 kb on - strandat 1777.842 kb on - strandat 1777.842 kb on - strandat 1777.842 kb on - strandat 1777.842 kb on - strandat 1777.868 kb on - strandat 1777.870 kb on + strandat 1777.939 kb on + strand, within Psyr_1583at 1777.949 kb on + strand, within Psyr_1583at 1778.090 kb on + strand, within Psyr_1583at 1778.090 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.127 kb on + strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.128 kb on - strand, within Psyr_1583at 1778.246 kb on + strand, within Psyr_1583at 1778.342 kb on + strand, within Psyr_1583at 1778.377 kb on + strand, within Psyr_1583at 1778.377 kb on + strand, within Psyr_1583at 1778.396 kb on + strand, within Psyr_1583at 1778.396 kb on + strand, within Psyr_1583at 1778.397 kb on - strand, within Psyr_1583at 1778.398 kb on + strand, within Psyr_1583at 1778.398 kb on + strand, within Psyr_1583at 1778.398 kb on + strand, within Psyr_1583at 1778.747 kb on + strandat 1778.747 kb on + strandat 1778.748 kb on - strandat 1778.848 kb on + strandat 1778.848 kb on + strandat 1778.848 kb on + strandat 1778.910 kb on - strandat 1779.039 kb on + strandat 1779.039 kb on + strandat 1779.039 kb on + strandat 1779.040 kb on - strandat 1779.040 kb on - strandat 1779.114 kb on + strand, within Psyr_1584at 1779.115 kb on - strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.129 kb on + strand, within Psyr_1584at 1779.130 kb on - strand, within Psyr_1584at 1779.160 kb on - strand, within Psyr_1584at 1779.160 kb on - strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.252 kb on + strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.253 kb on - strand, within Psyr_1584at 1779.254 kb on + strand, within Psyr_1584at 1779.254 kb on + strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.255 kb on - strand, within Psyr_1584at 1779.552 kb on + strand, within Psyr_1584at 1779.553 kb on - strand, within Psyr_1584at 1779.553 kb on - strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.594 kb on + strand, within Psyr_1584at 1779.595 kb on - strand, within Psyr_1584at 1779.774 kb on + strand, within Psyr_1584at 1779.774 kb on + strand, within Psyr_1584at 1779.775 kb on - strand, within Psyr_1584at 1779.775 kb on - strand, within Psyr_1584

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Diallyl sulfide 10 mM
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1,776,881 + Psyr_1582 0.23 -0.1
1,776,881 + Psyr_1582 0.23 +1.1
1,776,881 + Psyr_1582 0.23 +0.7
1,776,881 + Psyr_1582 0.23 +0.4
1,776,881 + Psyr_1582 0.23 -0.0
1,776,908 + Psyr_1582 0.26 +1.1
1,776,908 + Psyr_1582 0.26 +0.0
1,776,908 + Psyr_1582 0.26 -0.8
1,776,908 + Psyr_1582 0.26 -0.4
1,776,908 + Psyr_1582 0.26 -0.8
1,776,908 + Psyr_1582 0.26 -0.2
1,776,909 - Psyr_1582 0.26 +1.9
1,776,909 - Psyr_1582 0.26 +0.6
1,776,909 - Psyr_1582 0.26 -0.2
1,776,912 + Psyr_1582 0.26 -0.4
1,776,912 + Psyr_1582 0.26 -0.6
1,776,912 + Psyr_1582 0.26 +0.7
1,776,913 - Psyr_1582 0.26 -0.0
1,777,181 - Psyr_1582 0.51 +2.1
1,777,182 + Psyr_1582 0.51 -0.4
1,777,182 + Psyr_1582 0.51 +2.3
1,777,182 + Psyr_1582 0.51 +0.6
1,777,182 + Psyr_1582 0.51 +0.6
1,777,182 + Psyr_1582 0.51 -0.8
1,777,182 + Psyr_1582 0.51 -1.4
1,777,182 + Psyr_1582 0.51 +2.1
1,777,182 + Psyr_1582 0.51 +1.3
1,777,183 - Psyr_1582 0.51 +0.7
1,777,183 - Psyr_1582 0.51 +1.9
1,777,183 - Psyr_1582 0.51 +0.2
1,777,183 - Psyr_1582 0.51 -0.4
1,777,183 - Psyr_1582 0.51 +0.6
1,777,183 - Psyr_1582 0.51 +2.1
1,777,183 - Psyr_1582 0.51 +1.3
1,777,241 - Psyr_1582 0.57 +0.4
1,777,241 - Psyr_1582 0.57 +0.7
1,777,288 + Psyr_1582 0.61 -0.2
1,777,288 + Psyr_1582 0.61 +0.0
1,777,288 + Psyr_1582 0.61 -0.3
1,777,288 + Psyr_1582 0.61 +0.1
1,777,289 - Psyr_1582 0.61 +0.6
1,777,289 - Psyr_1582 0.61 +2.6
1,777,289 - Psyr_1582 0.61 +0.6
1,777,572 + Psyr_1582 0.88 +0.2
1,777,605 + +0.4
1,777,605 + +0.1
1,777,605 + -0.7
1,777,606 - -0.3
1,777,656 - +1.1
1,777,656 - -0.0
1,777,689 + -1.2
1,777,788 + +0.6
1,777,841 + -0.8
1,777,841 + -0.5
1,777,841 + -0.4
1,777,842 - -1.3
1,777,842 - -0.4
1,777,842 - +0.8
1,777,842 - +3.0
1,777,842 - -1.2
1,777,868 - -1.8
1,777,870 + +0.9
1,777,939 + Psyr_1583 0.11 +0.6
1,777,949 + Psyr_1583 0.12 -0.7
1,778,090 + Psyr_1583 0.27 -0.1
1,778,090 + Psyr_1583 0.27 +1.3
1,778,127 + Psyr_1583 0.31 +0.1
1,778,127 + Psyr_1583 0.31 +1.1
1,778,127 + Psyr_1583 0.31 +1.5
1,778,127 + Psyr_1583 0.31 -0.5
1,778,127 + Psyr_1583 0.31 -0.9
1,778,127 + Psyr_1583 0.31 +1.3
1,778,127 + Psyr_1583 0.31 -0.7
1,778,127 + Psyr_1583 0.31 -0.8
1,778,127 + Psyr_1583 0.31 +0.4
1,778,127 + Psyr_1583 0.31 -2.8
1,778,127 + Psyr_1583 0.31 +1.1
1,778,127 + Psyr_1583 0.31 +0.1
1,778,127 + Psyr_1583 0.31 +0.3
1,778,128 - Psyr_1583 0.31 +0.1
1,778,128 - Psyr_1583 0.31 +2.1
1,778,128 - Psyr_1583 0.31 -0.4
1,778,128 - Psyr_1583 0.31 -1.2
1,778,128 - Psyr_1583 0.31 +0.3
1,778,128 - Psyr_1583 0.31 +1.5
1,778,128 - Psyr_1583 0.31 +0.0
1,778,128 - Psyr_1583 0.31 +1.7
1,778,128 - Psyr_1583 0.31 -0.1
1,778,128 - Psyr_1583 0.31 +1.1
1,778,128 - Psyr_1583 0.31 -1.0
1,778,128 - Psyr_1583 0.31 -0.1
1,778,128 - Psyr_1583 0.31 +1.0
1,778,128 - Psyr_1583 0.31 -0.2
1,778,246 + Psyr_1583 0.43 +1.0
1,778,342 + Psyr_1583 0.53 -0.6
1,778,377 + Psyr_1583 0.56 +0.6
1,778,377 + Psyr_1583 0.56 -1.5
1,778,396 + Psyr_1583 0.58 -1.0
1,778,396 + Psyr_1583 0.58 -1.0
1,778,397 - Psyr_1583 0.58 +0.3
1,778,398 + Psyr_1583 0.58 +0.4
1,778,398 + Psyr_1583 0.58 -0.6
1,778,398 + Psyr_1583 0.58 +0.2
1,778,747 + +2.1
1,778,747 + +1.1
1,778,748 - +0.5
1,778,848 + +2.0
1,778,848 + +1.7
1,778,848 + +0.9
1,778,910 - -0.2
1,779,039 + +0.9
1,779,039 + +0.7
1,779,039 + +0.4
1,779,040 - +0.7
1,779,040 - +0.9
1,779,114 + Psyr_1584 0.14 +0.3
1,779,115 - Psyr_1584 0.14 +0.0
1,779,129 + Psyr_1584 0.16 +1.3
1,779,129 + Psyr_1584 0.16 -1.2
1,779,129 + Psyr_1584 0.16 +0.6
1,779,129 + Psyr_1584 0.16 +0.1
1,779,129 + Psyr_1584 0.16 +0.9
1,779,129 + Psyr_1584 0.16 +0.9
1,779,130 - Psyr_1584 0.16 -1.0
1,779,160 - Psyr_1584 0.19 +1.3
1,779,160 - Psyr_1584 0.19 +0.6
1,779,252 + Psyr_1584 0.29 -0.1
1,779,252 + Psyr_1584 0.29 -1.2
1,779,252 + Psyr_1584 0.29 -0.5
1,779,252 + Psyr_1584 0.29 +2.5
1,779,252 + Psyr_1584 0.29 +2.1
1,779,252 + Psyr_1584 0.29 +0.7
1,779,253 - Psyr_1584 0.29 -0.1
1,779,253 - Psyr_1584 0.29 +0.1
1,779,253 - Psyr_1584 0.29 +0.3
1,779,253 - Psyr_1584 0.29 -0.2
1,779,254 + Psyr_1584 0.29 -0.1
1,779,254 + Psyr_1584 0.29 -0.7
1,779,255 - Psyr_1584 0.29 +3.1
1,779,255 - Psyr_1584 0.29 -0.7
1,779,255 - Psyr_1584 0.29 +2.1
1,779,255 - Psyr_1584 0.29 +0.3
1,779,552 + Psyr_1584 0.61 -1.2
1,779,553 - Psyr_1584 0.61 +1.6
1,779,553 - Psyr_1584 0.61 +0.6
1,779,594 + Psyr_1584 0.65 -1.6
1,779,594 + Psyr_1584 0.65 +1.8
1,779,594 + Psyr_1584 0.65 +0.4
1,779,594 + Psyr_1584 0.65 +0.7
1,779,594 + Psyr_1584 0.65 +0.5
1,779,594 + Psyr_1584 0.65 -0.1
1,779,595 - Psyr_1584 0.66 -1.4
1,779,774 + Psyr_1584 0.85 +1.1
1,779,774 + Psyr_1584 0.85 +2.7
1,779,775 - Psyr_1584 0.85 +1.6
1,779,775 - Psyr_1584 0.85 -0.6

Or see this region's nucleotide sequence