Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07460 and BWI76_RS07465 overlap by 1 nucleotides BWI76_RS07465 and BWI76_RS07470 are separated by 190 nucleotides BWI76_RS07470 and BWI76_RS07475 are separated by 32 nucleotides BWI76_RS07475 and BWI76_RS07480 are separated by 36 nucleotides
BWI76_RS07460: BWI76_RS07460 - hypothetical protein, at 1,574,562 to 1,574,930
_RS07460
BWI76_RS07465: BWI76_RS07465 - TetR family transcriptional regulator, at 1,574,930 to 1,575,511
_RS07465
BWI76_RS07470: BWI76_RS07470 - MBL fold metallo-hydrolase, at 1,575,702 to 1,576,802
_RS07470
BWI76_RS07475: BWI76_RS07475 - DNA-binding transcriptional regulator RamA, at 1,576,835 to 1,577,176
_RS07475
BWI76_RS07480: BWI76_RS07480 - TonB-dependent siderophore receptor, at 1,577,213 to 1,579,357
_RS07480
Position (kb) 1575
1576
1577 Strain fitness (log2 ratio) -2
-1
0
1 at 1574.702 kb on + strand, within BWI76_RS07460 at 1574.900 kb on + strand at 1574.947 kb on - strand at 1575.250 kb on - strand, within BWI76_RS07465 at 1575.306 kb on + strand, within BWI76_RS07465 at 1575.514 kb on - strand at 1575.575 kb on - strand at 1575.835 kb on - strand, within BWI76_RS07470 at 1575.968 kb on + strand, within BWI76_RS07470 at 1576.364 kb on + strand, within BWI76_RS07470 at 1576.519 kb on - strand, within BWI76_RS07470 at 1576.693 kb on + strand at 1576.703 kb on + strand at 1576.801 kb on + strand at 1576.969 kb on + strand, within BWI76_RS07475 at 1577.368 kb on + strand at 1577.598 kb on + strand, within BWI76_RS07480 at 1577.656 kb on - strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.724 kb on + strand, within BWI76_RS07480 at 1577.724 kb on + strand, within BWI76_RS07480 at 1577.734 kb on + strand, within BWI76_RS07480 at 1577.749 kb on + strand, within BWI76_RS07480
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF remove 1,574,702 + BWI76_RS07460 0.38 -0.1 1,574,900 + -1.3 1,574,947 - +0.3 1,575,250 - BWI76_RS07465 0.55 +0.0 1,575,306 + BWI76_RS07465 0.65 +0.4 1,575,514 - -1.6 1,575,575 - +0.4 1,575,835 - BWI76_RS07470 0.12 +0.4 1,575,968 + BWI76_RS07470 0.24 -1.0 1,576,364 + BWI76_RS07470 0.60 -0.6 1,576,519 - BWI76_RS07470 0.74 -1.1 1,576,693 + -1.4 1,576,703 + +0.6 1,576,801 + -0.4 1,576,969 + BWI76_RS07475 0.39 -0.8 1,577,368 + -0.9 1,577,598 + BWI76_RS07480 0.18 +0.3 1,577,656 - BWI76_RS07480 0.21 +0.7 1,577,711 + BWI76_RS07480 0.23 -2.2 1,577,711 + BWI76_RS07480 0.23 +0.2 1,577,711 + BWI76_RS07480 0.23 +0.3 1,577,724 + BWI76_RS07480 0.24 -0.3 1,577,724 + BWI76_RS07480 0.24 +0.2 1,577,734 + BWI76_RS07480 0.24 +0.5 1,577,749 + BWI76_RS07480 0.25 +0.3
Or see this region's nucleotide sequence