Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07225

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07220 and BWI76_RS07225 are separated by 39 nucleotidesBWI76_RS07225 and BWI76_RS07230 are separated by 99 nucleotides BWI76_RS07220: BWI76_RS07220 - oxidoreductase NAD-binding protein, at 1,518,853 to 1,519,884 _RS07220 BWI76_RS07225: BWI76_RS07225 - putative oxidoreductase, at 1,519,924 to 1,520,931 _RS07225 BWI76_RS07230: BWI76_RS07230 - transcriptional regulator, at 1,521,031 to 1,522,050 _RS07230 Position (kb) 1519 1520 1521Strain fitness (log2 ratio) -1 0 1at 1518.943 kb on + strandat 1518.985 kb on - strand, within BWI76_RS07220at 1519.007 kb on - strand, within BWI76_RS07220at 1519.056 kb on + strand, within BWI76_RS07220at 1519.206 kb on + strand, within BWI76_RS07220at 1519.337 kb on - strand, within BWI76_RS07220at 1519.443 kb on - strand, within BWI76_RS07220at 1519.466 kb on - strand, within BWI76_RS07220at 1519.566 kb on + strand, within BWI76_RS07220at 1519.901 kb on - strandat 1519.990 kb on + strandat 1520.042 kb on - strand, within BWI76_RS07225at 1520.222 kb on + strand, within BWI76_RS07225at 1520.230 kb on - strand, within BWI76_RS07225at 1520.485 kb on - strand, within BWI76_RS07225at 1521.307 kb on + strand, within BWI76_RS07230at 1521.604 kb on + strand, within BWI76_RS07230at 1521.782 kb on - strand, within BWI76_RS07230at 1521.894 kb on + strand, within BWI76_RS07230

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
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1,518,943 + -0.5
1,518,985 - BWI76_RS07220 0.13 -0.9
1,519,007 - BWI76_RS07220 0.15 +0.1
1,519,056 + BWI76_RS07220 0.20 +1.0
1,519,206 + BWI76_RS07220 0.34 -0.5
1,519,337 - BWI76_RS07220 0.47 -0.5
1,519,443 - BWI76_RS07220 0.57 +0.2
1,519,466 - BWI76_RS07220 0.59 -0.6
1,519,566 + BWI76_RS07220 0.69 +0.2
1,519,901 - +0.4
1,519,990 + +0.7
1,520,042 - BWI76_RS07225 0.12 +0.0
1,520,222 + BWI76_RS07225 0.30 -1.5
1,520,230 - BWI76_RS07225 0.30 -1.1
1,520,485 - BWI76_RS07225 0.56 -0.4
1,521,307 + BWI76_RS07230 0.27 -0.1
1,521,604 + BWI76_RS07230 0.56 +0.1
1,521,782 - BWI76_RS07230 0.74 -0.1
1,521,894 + BWI76_RS07230 0.85 +0.0

Or see this region's nucleotide sequence