Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06235 and BWI76_RS06240 are separated by 418 nucleotides BWI76_RS06240 and BWI76_RS06245 are separated by 123 nucleotides
BWI76_RS06235: BWI76_RS06235 - PAS domain-containing sensor histidine kinase, at 1,308,454 to 1,309,743
_RS06235
BWI76_RS06240: BWI76_RS06240 - branched-chain amino acid transport system 2 carrier protein BrnQ, at 1,310,162 to 1,311,481
_RS06240
BWI76_RS06245: BWI76_RS06245 - proline-specific permease ProY, at 1,311,605 to 1,312,975
_RS06245
Position (kb)
1310
1311
1312 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1309.256 kb on - strand, within BWI76_RS06235 at 1309.312 kb on + strand, within BWI76_RS06235 at 1309.374 kb on - strand, within BWI76_RS06235 at 1309.654 kb on + strand at 1309.657 kb on - strand at 1309.699 kb on + strand at 1309.814 kb on + strand at 1309.961 kb on + strand at 1310.003 kb on - strand at 1310.122 kb on - strand at 1310.139 kb on + strand at 1310.203 kb on + strand at 1310.211 kb on + strand at 1310.281 kb on + strand at 1310.281 kb on + strand at 1310.350 kb on + strand, within BWI76_RS06240 at 1310.538 kb on - strand, within BWI76_RS06240 at 1311.041 kb on + strand, within BWI76_RS06240 at 1311.058 kb on - strand, within BWI76_RS06240 at 1311.155 kb on + strand, within BWI76_RS06240 at 1311.318 kb on - strand, within BWI76_RS06240 at 1311.352 kb on + strand at 1311.352 kb on + strand at 1311.386 kb on + strand at 1311.396 kb on + strand at 1311.487 kb on + strand at 1311.490 kb on + strand at 1311.490 kb on + strand at 1311.492 kb on + strand at 1311.552 kb on + strand at 1311.681 kb on + strand at 1312.024 kb on - strand, within BWI76_RS06245 at 1312.316 kb on - strand, within BWI76_RS06245 at 1312.316 kb on - strand, within BWI76_RS06245 at 1312.472 kb on + strand, within BWI76_RS06245
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF remove 1,309,256 - BWI76_RS06235 0.62 -0.7 1,309,312 + BWI76_RS06235 0.67 +0.1 1,309,374 - BWI76_RS06235 0.71 +0.8 1,309,654 + +0.2 1,309,657 - +0.2 1,309,699 + -0.4 1,309,814 + -0.8 1,309,961 + -1.0 1,310,003 - -0.1 1,310,122 - +0.2 1,310,139 + +0.9 1,310,203 + -0.6 1,310,211 + -0.5 1,310,281 + -1.2 1,310,281 + -1.7 1,310,350 + BWI76_RS06240 0.14 -0.9 1,310,538 - BWI76_RS06240 0.28 +0.3 1,311,041 + BWI76_RS06240 0.67 -0.5 1,311,058 - BWI76_RS06240 0.68 -0.2 1,311,155 + BWI76_RS06240 0.75 -1.3 1,311,318 - BWI76_RS06240 0.88 -0.1 1,311,352 + -1.9 1,311,352 + +0.0 1,311,386 + +2.0 1,311,396 + +0.2 1,311,487 + +0.3 1,311,490 + -0.1 1,311,490 + +0.8 1,311,492 + +0.4 1,311,552 + +0.1 1,311,681 + -0.1 1,312,024 - BWI76_RS06245 0.31 -0.1 1,312,316 - BWI76_RS06245 0.52 +0.4 1,312,316 - BWI76_RS06245 0.52 +0.2 1,312,472 + BWI76_RS06245 0.63 -0.3
Or see this region's nucleotide sequence