Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04205 and BWI76_RS04210 are separated by 209 nucleotides BWI76_RS04210 and BWI76_RS04215 are separated by 12 nucleotides BWI76_RS04215 and BWI76_RS04220 overlap by 1 nucleotides
BWI76_RS04205: BWI76_RS04205 - right oriC-binding transcriptional activator, at 864,977 to 865,846
_RS04205
BWI76_RS04210: BWI76_RS04210 - hypothetical protein, at 866,056 to 866,529
_RS04210
BWI76_RS04215: BWI76_RS04215 - DNA-binding response regulator, at 866,542 to 867,231
_RS04215
BWI76_RS04220: BWI76_RS04220 - two-component sensor histidine kinase, at 867,231 to 868,655
_RS04220
Position (kb) 866
867 Strain fitness (log2 ratio) -1
0
1 at 865.206 kb on + strand, within BWI76_RS04205 at 865.409 kb on + strand, within BWI76_RS04205 at 865.410 kb on + strand, within BWI76_RS04205 at 865.416 kb on - strand, within BWI76_RS04205 at 865.420 kb on + strand, within BWI76_RS04205 at 865.435 kb on + strand, within BWI76_RS04205 at 865.538 kb on + strand, within BWI76_RS04205 at 865.551 kb on - strand, within BWI76_RS04205 at 865.653 kb on - strand, within BWI76_RS04205 at 865.759 kb on - strand, within BWI76_RS04205 at 865.767 kb on + strand at 865.800 kb on + strand at 865.809 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.859 kb on + strand at 865.859 kb on + strand at 865.859 kb on + strand at 865.866 kb on + strand at 866.247 kb on + strand, within BWI76_RS04210 at 866.258 kb on + strand, within BWI76_RS04210 at 866.279 kb on + strand, within BWI76_RS04210 at 866.279 kb on + strand, within BWI76_RS04210 at 866.287 kb on - strand, within BWI76_RS04210 at 866.551 kb on + strand at 866.598 kb on + strand at 866.606 kb on - strand at 866.606 kb on - strand at 866.734 kb on - strand, within BWI76_RS04215 at 866.786 kb on - strand, within BWI76_RS04215 at 866.786 kb on - strand, within BWI76_RS04215 at 866.803 kb on - strand, within BWI76_RS04215 at 867.088 kb on + strand, within BWI76_RS04215 at 867.103 kb on + strand, within BWI76_RS04215 at 867.132 kb on - strand, within BWI76_RS04215 at 867.215 kb on + strand at 867.215 kb on + strand at 867.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF remove 865,206 + BWI76_RS04205 0.26 +0.5 865,409 + BWI76_RS04205 0.50 +0.6 865,410 + BWI76_RS04205 0.50 +0.5 865,416 - BWI76_RS04205 0.50 +0.4 865,420 + BWI76_RS04205 0.51 -0.7 865,435 + BWI76_RS04205 0.53 -0.5 865,538 + BWI76_RS04205 0.64 +0.1 865,551 - BWI76_RS04205 0.66 +0.8 865,653 - BWI76_RS04205 0.78 -0.2 865,759 - BWI76_RS04205 0.90 -0.3 865,767 + +0.2 865,800 + -0.2 865,809 + +1.0 865,811 + -0.6 865,811 + +0.3 865,811 + +0.8 865,811 + +0.3 865,811 + +0.9 865,811 + +0.2 865,811 + +0.2 865,819 - +0.9 865,819 - +0.4 865,819 - -0.6 865,819 - +0.1 865,819 - +1.6 865,859 + +0.5 865,859 + -0.6 865,859 + -0.9 865,866 + +1.2 866,247 + BWI76_RS04210 0.40 +0.7 866,258 + BWI76_RS04210 0.43 -0.4 866,279 + BWI76_RS04210 0.47 -0.8 866,279 + BWI76_RS04210 0.47 -1.0 866,287 - BWI76_RS04210 0.49 -0.2 866,551 + -1.1 866,598 + +0.7 866,606 - -0.1 866,606 - +1.1 866,734 - BWI76_RS04215 0.28 -0.1 866,786 - BWI76_RS04215 0.35 -0.0 866,786 - BWI76_RS04215 0.35 +0.1 866,803 - BWI76_RS04215 0.38 -0.2 867,088 + BWI76_RS04215 0.79 -0.2 867,103 + BWI76_RS04215 0.81 -0.1 867,132 - BWI76_RS04215 0.86 -1.4 867,215 + +0.3 867,215 + -0.0 867,356 + -0.2
Or see this region's nucleotide sequence