Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02365

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02355 and BWI76_RS02360 are separated by 134 nucleotidesBWI76_RS02360 and BWI76_RS02365 are separated by 86 nucleotidesBWI76_RS02365 and BWI76_RS02370 are separated by 23 nucleotides BWI76_RS02355: BWI76_RS02355 - molecular chaperone GroEL, at 483,512 to 485,158 _RS02355 BWI76_RS02360: BWI76_RS02360 - hypothetical protein, at 485,293 to 485,646 _RS02360 BWI76_RS02365: BWI76_RS02365 - hypothetical protein, at 485,733 to 486,596 _RS02365 BWI76_RS02370: BWI76_RS02370 - colicin V synthesis protein, at 486,620 to 488,743 _RS02370 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1at 485.083 kb on + strandat 485.174 kb on - strandat 485.259 kb on - strandat 485.329 kb on + strand, within BWI76_RS02360at 485.329 kb on + strand, within BWI76_RS02360at 485.342 kb on - strand, within BWI76_RS02360at 485.342 kb on - strand, within BWI76_RS02360at 485.414 kb on - strand, within BWI76_RS02360at 485.435 kb on - strand, within BWI76_RS02360at 485.472 kb on + strand, within BWI76_RS02360at 485.480 kb on - strand, within BWI76_RS02360at 485.517 kb on + strand, within BWI76_RS02360at 485.550 kb on + strand, within BWI76_RS02360at 485.591 kb on + strand, within BWI76_RS02360at 485.591 kb on + strand, within BWI76_RS02360at 485.599 kb on - strand, within BWI76_RS02360at 485.599 kb on - strand, within BWI76_RS02360at 485.625 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.626 kb on + strandat 485.634 kb on - strandat 485.634 kb on - strandat 485.634 kb on - strandat 485.634 kb on - strandat 485.645 kb on + strandat 485.656 kb on + strandat 485.656 kb on + strandat 485.657 kb on + strandat 485.662 kb on + strandat 485.662 kb on + strandat 485.664 kb on - strandat 485.665 kb on - strandat 485.669 kb on + strandat 485.670 kb on - strandat 485.672 kb on + strandat 485.680 kb on + strandat 485.683 kb on - strandat 485.712 kb on - strandat 485.738 kb on - strandat 485.738 kb on - strandat 485.771 kb on + strandat 485.788 kb on + strandat 485.796 kb on - strandat 485.796 kb on - strandat 485.796 kb on - strandat 485.796 kb on - strandat 485.796 kb on - strandat 485.861 kb on - strand, within BWI76_RS02365at 485.954 kb on + strand, within BWI76_RS02365at 485.989 kb on + strandat 486.097 kb on + strand, within BWI76_RS02365at 486.105 kb on - strand, within BWI76_RS02365at 486.105 kb on - strand, within BWI76_RS02365at 486.112 kb on - strand, within BWI76_RS02365at 486.193 kb on + strandat 486.201 kb on - strand, within BWI76_RS02365at 486.203 kb on + strand, within BWI76_RS02365at 486.313 kb on - strand, within BWI76_RS02365at 486.407 kb on + strand, within BWI76_RS02365at 486.415 kb on - strand, within BWI76_RS02365at 486.415 kb on - strand, within BWI76_RS02365at 486.420 kb on - strand, within BWI76_RS02365at 486.470 kb on + strand, within BWI76_RS02365at 486.471 kb on + strand, within BWI76_RS02365at 486.479 kb on - strand, within BWI76_RS02365at 486.479 kb on - strand, within BWI76_RS02365at 486.553 kb on + strandat 486.634 kb on + strandat 486.636 kb on - strandat 486.641 kb on - strandat 486.642 kb on - strandat 486.642 kb on - strandat 486.642 kb on - strandat 486.696 kb on - strandat 486.706 kb on + strandat 486.714 kb on - strandat 486.724 kb on - strandat 486.865 kb on - strand, within BWI76_RS02370at 486.865 kb on - strand, within BWI76_RS02370at 487.038 kb on + strand, within BWI76_RS02370at 487.038 kb on + strand, within BWI76_RS02370at 487.093 kb on + strand, within BWI76_RS02370at 487.093 kb on + strand, within BWI76_RS02370at 487.101 kb on - strand, within BWI76_RS02370at 487.104 kb on - strand, within BWI76_RS02370at 487.154 kb on - strand, within BWI76_RS02370at 487.154 kb on - strand, within BWI76_RS02370at 487.154 kb on - strand, within BWI76_RS02370at 487.156 kb on + strand, within BWI76_RS02370at 487.164 kb on - strand, within BWI76_RS02370at 487.194 kb on - strand, within BWI76_RS02370at 487.286 kb on - strand, within BWI76_RS02370at 487.301 kb on + strand, within BWI76_RS02370at 487.321 kb on - strandat 487.321 kb on - strand, within BWI76_RS02370at 487.321 kb on - strandat 487.407 kb on - strand, within BWI76_RS02370at 487.451 kb on - strand, within BWI76_RS02370at 487.462 kb on - strand, within BWI76_RS02370at 487.468 kb on - strand, within BWI76_RS02370at 487.550 kb on - strand, within BWI76_RS02370at 487.564 kb on - strand, within BWI76_RS02370at 487.578 kb on - strand, within BWI76_RS02370

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
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485,083 + -1.2
485,174 - -0.7
485,259 - -0.2
485,329 + BWI76_RS02360 0.10 +1.0
485,329 + BWI76_RS02360 0.10 -0.1
485,342 - BWI76_RS02360 0.14 -1.2
485,342 - BWI76_RS02360 0.14 +1.1
485,414 - BWI76_RS02360 0.34 -0.4
485,435 - BWI76_RS02360 0.40 -0.4
485,472 + BWI76_RS02360 0.51 +0.4
485,480 - BWI76_RS02360 0.53 +0.3
485,517 + BWI76_RS02360 0.63 +1.3
485,550 + BWI76_RS02360 0.73 +0.7
485,591 + BWI76_RS02360 0.84 -0.0
485,591 + BWI76_RS02360 0.84 +0.5
485,599 - BWI76_RS02360 0.86 -0.3
485,599 - BWI76_RS02360 0.86 +0.4
485,625 + -1.2
485,626 + -0.3
485,626 + +0.2
485,626 + -0.5
485,626 + -1.1
485,626 + -0.1
485,626 + +1.4
485,626 + -0.2
485,626 + -0.5
485,626 + +0.2
485,634 - -0.5
485,634 - +1.4
485,634 - +0.3
485,634 - -0.5
485,645 + -0.3
485,656 + -2.0
485,656 + -0.2
485,657 + -0.1
485,662 + -1.0
485,662 + +0.3
485,664 - +0.1
485,665 - +0.4
485,669 + -1.2
485,670 - +0.2
485,672 + -0.5
485,680 + +0.2
485,683 - -0.1
485,712 - +0.0
485,738 - +0.1
485,738 - +0.2
485,771 + +0.2
485,788 + -0.2
485,796 - +0.4
485,796 - -1.0
485,796 - -0.1
485,796 - -0.2
485,796 - -0.7
485,861 - BWI76_RS02365 0.15 -0.8
485,954 + BWI76_RS02365 0.26 -0.9
485,989 + -0.5
486,097 + BWI76_RS02365 0.42 -0.9
486,105 - BWI76_RS02365 0.43 +0.6
486,105 - BWI76_RS02365 0.43 -1.0
486,112 - BWI76_RS02365 0.44 -0.5
486,193 + +0.5
486,201 - BWI76_RS02365 0.54 -0.1
486,203 + BWI76_RS02365 0.54 -1.1
486,313 - BWI76_RS02365 0.67 +0.1
486,407 + BWI76_RS02365 0.78 -1.3
486,415 - BWI76_RS02365 0.79 +0.1
486,415 - BWI76_RS02365 0.79 +0.2
486,420 - BWI76_RS02365 0.80 -1.3
486,470 + BWI76_RS02365 0.85 -0.7
486,471 + BWI76_RS02365 0.85 -0.2
486,479 - BWI76_RS02365 0.86 -0.5
486,479 - BWI76_RS02365 0.86 -0.6
486,553 + +0.1
486,634 + +0.0
486,636 - -0.6
486,641 - -0.5
486,642 - +0.4
486,642 - +0.2
486,642 - -0.1
486,696 - +0.2
486,706 + -0.3
486,714 - -2.6
486,724 - +0.2
486,865 - BWI76_RS02370 0.12 +0.6
486,865 - BWI76_RS02370 0.12 -1.2
487,038 + BWI76_RS02370 0.20 +0.9
487,038 + BWI76_RS02370 0.20 -1.0
487,093 + BWI76_RS02370 0.22 -0.2
487,093 + BWI76_RS02370 0.22 +0.2
487,101 - BWI76_RS02370 0.23 -0.3
487,104 - BWI76_RS02370 0.23 +0.5
487,154 - BWI76_RS02370 0.25 -0.1
487,154 - BWI76_RS02370 0.25 -1.2
487,154 - BWI76_RS02370 0.25 -2.3
487,156 + BWI76_RS02370 0.25 -1.2
487,164 - BWI76_RS02370 0.26 -0.3
487,194 - BWI76_RS02370 0.27 -0.6
487,286 - BWI76_RS02370 0.31 +0.0
487,301 + BWI76_RS02370 0.32 +0.0
487,321 - +0.6
487,321 - BWI76_RS02370 0.33 +0.9
487,321 - +1.0
487,407 - BWI76_RS02370 0.37 -2.0
487,451 - BWI76_RS02370 0.39 -1.2
487,462 - BWI76_RS02370 0.40 +0.6
487,468 - BWI76_RS02370 0.40 -0.5
487,550 - BWI76_RS02370 0.44 -0.2
487,564 - BWI76_RS02370 0.44 -0.5
487,578 - BWI76_RS02370 0.45 +0.4

Or see this region's nucleotide sequence