Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04139 and SMc04138 are separated by 1 nucleotides SMc04138 and SMc04137 are separated by 22 nucleotides SMc04137 and SMc04136 overlap by 8 nucleotides
SMc04139: SMc04139 - oxidoreductase, at 132,586 to 133,659
SMc04139
SMc04138: SMc04138 - oxidoreductase, at 133,661 to 134,677
SMc04138
SMc04137: SMc04137 - ABC transporter permease, at 134,700 to 135,587
SMc04137
SMc04136: SMc04136 - ABC transporter permease, at 135,580 to 136,527
SMc04136
Position (kb)
133
134
135 Strain fitness (log2 ratio)
-2
-1
0
1 at 132.674 kb on + strand at 132.881 kb on + strand, within SMc04139 at 132.882 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.172 kb on + strand, within SMc04139 at 133.173 kb on - strand, within SMc04139 at 133.173 kb on - strand, within SMc04139 at 133.176 kb on - strand at 133.176 kb on - strand, within SMc04139 at 133.217 kb on + strand, within SMc04139 at 133.218 kb on - strand, within SMc04139 at 133.277 kb on + strand, within SMc04139 at 133.596 kb on - strand at 134.017 kb on + strand, within SMc04138 at 134.017 kb on + strand, within SMc04138 at 134.018 kb on - strand, within SMc04138 at 134.160 kb on + strand, within SMc04138 at 134.311 kb on - strand, within SMc04138 at 134.536 kb on - strand, within SMc04138 at 134.628 kb on + strand at 134.628 kb on + strand at 134.629 kb on - strand at 134.866 kb on + strand, within SMc04137 at 134.866 kb on + strand, within SMc04137 at 134.867 kb on - strand, within SMc04137 at 134.887 kb on + strand, within SMc04137 at 135.043 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.182 kb on - strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.370 kb on + strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.467 kb on - strand, within SMc04137 at 135.590 kb on + strand at 135.590 kb on + strand at 135.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 132,674 + +0.3 132,881 + SMc04139 0.27 -2.6 132,882 - SMc04139 0.28 -0.5 133,096 - SMc04139 0.47 +0.1 133,096 - SMc04139 0.47 -1.2 133,096 - SMc04139 0.47 +0.0 133,096 - SMc04139 0.47 +0.4 133,172 + SMc04139 0.55 -0.2 133,173 - SMc04139 0.55 +0.2 133,173 - SMc04139 0.55 +0.4 133,176 - -0.5 133,176 - SMc04139 0.55 +0.0 133,217 + SMc04139 0.59 +0.6 133,218 - SMc04139 0.59 -1.2 133,277 + SMc04139 0.64 +1.0 133,596 - -0.0 134,017 + SMc04138 0.35 +0.8 134,017 + SMc04138 0.35 +0.4 134,018 - SMc04138 0.35 +0.4 134,160 + SMc04138 0.49 +0.7 134,311 - SMc04138 0.64 +0.3 134,536 - SMc04138 0.86 +0.6 134,628 + -0.0 134,628 + -0.5 134,629 - +1.0 134,866 + SMc04137 0.19 -0.6 134,866 + SMc04137 0.19 -0.3 134,867 - SMc04137 0.19 -0.3 134,887 + SMc04137 0.21 -0.0 135,043 - SMc04137 0.39 -0.8 135,158 - SMc04137 0.52 -0.2 135,158 - SMc04137 0.52 +0.4 135,182 - SMc04137 0.54 -0.5 135,256 + SMc04137 0.63 -0.8 135,256 + SMc04137 0.63 +0.1 135,256 + SMc04137 0.63 +0.5 135,256 + SMc04137 0.63 +0.3 135,256 + SMc04137 0.63 -0.3 135,256 + SMc04137 0.63 +0.3 135,370 + SMc04137 0.75 +0.3 135,371 - SMc04137 0.76 -0.6 135,371 - SMc04137 0.76 -0.4 135,371 - SMc04137 0.76 -0.5 135,467 - SMc04137 0.86 -1.0 135,590 + +0.4 135,590 + +0.2 135,591 - -0.3
Or see this region's nucleotide sequence