Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04126 and SMc04125 are separated by 4 nucleotides SMc04125 and SMc04124 are separated by 3 nucleotides SMc04124 and SMc04123 overlap by 4 nucleotides SMc04123 and SMc04122 are separated by 0 nucleotides
SMc04126: SMc04126 - ABC transporter permease, at 149,339 to 150,472
SMc04126
SMc04125: SMc04125 - ABC transporter permease, at 150,477 to 151,448
SMc04125
SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910
SMc04124
SMc04123: SMc04123 - purine nucleoside phosphorylase, at 151,907 to 152,704
SMc04123
SMc04122: SMc04122 - thymidine phosphorylase, at 152,705 to 154,027
SMc04122
Position (kb) 151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.924 kb on + strand, within SMc04125 at 150.925 kb on - strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.961 kb on - strand, within SMc04125 at 151.003 kb on - strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.198 kb on - strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.245 kb on - strand, within SMc04125 at 151.362 kb on - strand at 151.362 kb on - strand at 151.426 kb on + strand at 151.432 kb on - strand at 151.490 kb on + strand at 151.490 kb on + strand at 151.490 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.497 kb on - strand at 151.497 kb on - strand at 151.497 kb on - strand at 151.500 kb on + strand, within SMc04124 at 151.501 kb on - strand, within SMc04124 at 151.501 kb on - strand, within SMc04124 at 151.502 kb on + strand, within SMc04124 at 151.626 kb on + strand, within SMc04124 at 151.626 kb on + strand at 151.626 kb on + strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.697 kb on + strand, within SMc04124 at 151.698 kb on - strand, within SMc04124 at 151.825 kb on - strand, within SMc04124 at 152.030 kb on + strand, within SMc04123 at 152.031 kb on - strand, within SMc04123 at 152.141 kb on + strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.433 kb on - strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 150,924 + SMc04125 0.46 -0.5 150,925 - SMc04125 0.46 +0.1 150,960 + SMc04125 0.50 +0.0 150,960 + SMc04125 0.50 -0.4 150,961 - SMc04125 0.50 +0.5 151,003 - SMc04125 0.54 -0.8 151,197 + SMc04125 0.74 -0.4 151,197 + SMc04125 0.74 -0.1 151,197 + SMc04125 0.74 -0.7 151,198 - SMc04125 0.74 -1.0 151,244 + SMc04125 0.79 -0.4 151,244 + SMc04125 0.79 -0.2 151,244 + SMc04125 0.79 +0.3 151,245 - SMc04125 0.79 -0.4 151,362 - -0.3 151,362 - +0.6 151,426 + -1.7 151,432 - -0.2 151,490 + +0.6 151,490 + -0.1 151,490 + -0.0 151,496 + +0.6 151,496 + -0.1 151,496 + -0.8 151,496 + -0.7 151,496 + +0.5 151,496 + -1.2 151,496 + -0.4 151,496 + +0.2 151,496 + +0.2 151,497 - -0.0 151,497 - -0.6 151,497 - -0.6 151,500 + SMc04124 0.10 +2.3 151,501 - SMc04124 0.11 +0.6 151,501 - SMc04124 0.11 +0.1 151,502 + SMc04124 0.11 +0.1 151,626 + SMc04124 0.38 +1.2 151,626 + -0.0 151,626 + SMc04124 0.38 -0.0 151,627 - SMc04124 0.38 -1.8 151,627 - SMc04124 0.38 +0.0 151,627 - SMc04124 0.38 +0.2 151,697 + SMc04124 0.53 +2.3 151,698 - SMc04124 0.54 -0.1 151,825 - SMc04124 0.81 -1.2 152,030 + SMc04123 0.15 -0.1 152,031 - SMc04123 0.16 -1.5 152,141 + SMc04123 0.29 -0.2 152,145 - SMc04123 0.30 -2.3 152,145 - SMc04123 0.30 +0.6 152,145 - SMc04123 0.30 -0.7 152,145 - SMc04123 0.30 +1.8 152,361 - SMc04123 0.57 +1.4 152,361 - SMc04123 0.57 +1.6 152,432 + SMc04123 0.66 +0.4 152,432 + SMc04123 0.66 -0.3 152,433 - SMc04123 0.66 -0.7 152,434 + SMc04123 0.66 +0.2 152,434 + SMc04123 0.66 -0.3 152,434 + SMc04123 0.66 -1.1 152,434 + SMc04123 0.66 -0.3 152,435 - SMc04123 0.66 -0.2 152,435 - SMc04123 0.66 +0.2 152,435 - SMc04123 0.66 -0.1 152,435 - SMc04123 0.66 -0.2
Or see this region's nucleotide sequence