Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03205 and SMc03206 are separated by 163 nucleotides SMc03206 and SMc03207 are separated by 11 nucleotides
SMc03205: SMc03205 - formyltetrahydrofolate deformylase, at 3,170,213 to 3,171,097
SMc03205
SMc03206: SMc03206 - maleylacetoacetate isomerase (glutathione transferase zeta 1) protein, at 3,171,261 to 3,171,914
SMc03206
SMc03207: SMc03207 - aromatic amino acid degradation protein, at 3,171,926 to 3,172,942
SMc03207
Position (kb)
3171
3172 Strain fitness (log2 ratio)
-2
-1
0
1 at 3170.788 kb on - strand, within SMc03205 at 3171.009 kb on + strand at 3171.009 kb on + strand at 3171.009 kb on + strand at 3171.010 kb on - strand at 3171.010 kb on - strand at 3171.010 kb on - strand at 3171.010 kb on - strand at 3171.010 kb on - strand at 3171.087 kb on + strand at 3171.087 kb on + strand at 3171.087 kb on + strand at 3171.088 kb on - strand at 3171.088 kb on - strand at 3171.088 kb on - strand at 3171.139 kb on - strand at 3171.262 kb on + strand at 3171.324 kb on + strand at 3171.325 kb on - strand at 3171.379 kb on + strand, within SMc03206 at 3171.379 kb on + strand, within SMc03206 at 3171.380 kb on - strand, within SMc03206 at 3171.380 kb on - strand, within SMc03206 at 3171.461 kb on + strand, within SMc03206 at 3171.461 kb on + strand, within SMc03206 at 3171.461 kb on + strand, within SMc03206 at 3171.462 kb on - strand, within SMc03206 at 3171.462 kb on - strand, within SMc03206 at 3171.462 kb on - strand, within SMc03206 at 3171.601 kb on + strand, within SMc03206 at 3171.602 kb on - strand, within SMc03206 at 3171.602 kb on - strand, within SMc03206 at 3171.602 kb on - strand, within SMc03206 at 3171.679 kb on + strand, within SMc03206 at 3171.680 kb on - strand, within SMc03206 at 3171.680 kb on - strand, within SMc03206 at 3171.853 kb on + strand at 3171.854 kb on - strand at 3171.874 kb on + strand at 3171.874 kb on + strand at 3171.939 kb on + strand at 3172.092 kb on + strand, within SMc03207 at 3172.381 kb on - strand, within SMc03207 at 3172.381 kb on - strand, within SMc03207 at 3172.451 kb on + strand, within SMc03207 at 3172.605 kb on + strand, within SMc03207 at 3172.605 kb on + strand, within SMc03207 at 3172.605 kb on + strand, within SMc03207 at 3172.683 kb on + strand, within SMc03207 at 3172.684 kb on - strand, within SMc03207 at 3172.684 kb on - strand, within SMc03207 at 3172.852 kb on + strand at 3172.852 kb on + strand at 3172.852 kb on + strand at 3172.853 kb on - strand at 3172.853 kb on - strand at 3172.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,170,788 - SMc03205 0.65 +0.0 3,171,009 + +0.1 3,171,009 + +1.0 3,171,009 + +0.3 3,171,010 - -2.0 3,171,010 - -0.2 3,171,010 - -0.5 3,171,010 - +0.1 3,171,010 - -0.3 3,171,087 + -0.0 3,171,087 + -1.6 3,171,087 + -0.2 3,171,088 - -1.9 3,171,088 - +0.0 3,171,088 - -0.0 3,171,139 - -0.6 3,171,262 + -0.3 3,171,324 + +0.1 3,171,325 - -0.4 3,171,379 + SMc03206 0.18 -0.8 3,171,379 + SMc03206 0.18 -1.0 3,171,380 - SMc03206 0.18 +0.4 3,171,380 - SMc03206 0.18 -0.3 3,171,461 + SMc03206 0.31 -2.4 3,171,461 + SMc03206 0.31 -1.5 3,171,461 + SMc03206 0.31 -0.7 3,171,462 - SMc03206 0.31 -0.4 3,171,462 - SMc03206 0.31 +0.2 3,171,462 - SMc03206 0.31 -1.0 3,171,601 + SMc03206 0.52 +0.9 3,171,602 - SMc03206 0.52 -0.0 3,171,602 - SMc03206 0.52 -0.8 3,171,602 - SMc03206 0.52 -0.6 3,171,679 + SMc03206 0.64 -0.0 3,171,680 - SMc03206 0.64 +0.4 3,171,680 - SMc03206 0.64 +0.0 3,171,853 + -0.2 3,171,854 - +0.3 3,171,874 + +0.5 3,171,874 + -0.2 3,171,939 + -0.5 3,172,092 + SMc03207 0.16 +1.5 3,172,381 - SMc03207 0.45 +0.5 3,172,381 - SMc03207 0.45 +0.5 3,172,451 + SMc03207 0.52 -0.7 3,172,605 + SMc03207 0.67 -0.7 3,172,605 + SMc03207 0.67 -0.1 3,172,605 + SMc03207 0.67 -0.4 3,172,683 + SMc03207 0.74 +0.4 3,172,684 - SMc03207 0.75 -1.4 3,172,684 - SMc03207 0.75 -0.1 3,172,852 + -0.8 3,172,852 + +1.5 3,172,852 + -0.4 3,172,853 - -1.2 3,172,853 - +0.7 3,172,853 - +0.2
Or see this region's nucleotide sequence