Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03127 and SMc03126 overlap by 4 nucleotides SMc03126 and SMc03125 overlap by 4 nucleotides SMc03125 and SMc03124 are separated by 93 nucleotides
SMc03127: SMc03127 - ABC transporter permease, at 3,202,125 to 3,203,051
SMc03127
SMc03126: SMc03126 - transport system ATP-binding ABC transporter protein, at 3,203,048 to 3,204,046
SMc03126
SMc03125: SMc03125 - transport system ATP-binding ABC transporter protein, at 3,204,043 to 3,205,056
SMc03125
SMc03124: SMc03124 - periplasmic binding ABC transporter protein, at 3,205,150 to 3,206,778
SMc03124
Position (kb) 3204
3205
3206 Strain fitness (log2 ratio) -1
0
1 at 3203.301 kb on + strand, within SMc03126 at 3204.006 kb on + strand at 3204.707 kb on + strand, within SMc03125 at 3205.141 kb on + strand at 3205.405 kb on - strand, within SMc03124 at 3205.599 kb on - strand, within SMc03124 at 3205.638 kb on - strand, within SMc03124 at 3205.638 kb on - strand, within SMc03124 at 3205.719 kb on - strand, within SMc03124 at 3205.846 kb on + strand, within SMc03124
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,203,301 + SMc03126 0.25 +0.5 3,204,006 + +1.5 3,204,707 + SMc03125 0.65 +0.5 3,205,141 + -0.9 3,205,405 - SMc03124 0.16 +0.8 3,205,599 - SMc03124 0.28 -1.3 3,205,638 - SMc03124 0.30 -1.5 3,205,638 - SMc03124 0.30 +1.5 3,205,719 - SMc03124 0.35 +0.5 3,205,846 + SMc03124 0.43 +1.1
Or see this region's nucleotide sequence