Strain Fitness in Sinorhizobium meliloti 1021 around SMc02890

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02889 and SMc02890 overlap by 4 nucleotidesSMc02890 and SMc02891 are separated by 11 nucleotides SMc02889: SMc02889 - transporter, at 244,292 to 245,557 SMc02889 SMc02890: SMc02890 - outer membrane receptor protein, at 245,554 to 247,554 SMc02890 SMc02891: SMc02891 - oxidoreductase transmembrane protein, at 247,566 to 248,726 SMc02891 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 244.784 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.790 kb on + strand, within SMc02889at 244.843 kb on + strand, within SMc02889at 244.843 kb on + strand, within SMc02889at 244.844 kb on - strand, within SMc02889at 244.844 kb on - strand, within SMc02889at 244.870 kb on + strand, within SMc02889at 244.870 kb on + strand, within SMc02889at 244.871 kb on - strand, within SMc02889at 244.961 kb on - strand, within SMc02889at 244.961 kb on - strand, within SMc02889at 244.967 kb on + strand, within SMc02889at 244.967 kb on + strand, within SMc02889at 244.980 kb on + strand, within SMc02889at 244.981 kb on - strand, within SMc02889at 245.280 kb on - strand, within SMc02889at 245.661 kb on + strandat 245.662 kb on - strandat 245.662 kb on - strandat 245.662 kb on - strandat 245.664 kb on + strandat 245.826 kb on + strand, within SMc02890at 245.826 kb on + strand, within SMc02890at 245.827 kb on - strand, within SMc02890at 245.827 kb on - strand, within SMc02890at 245.827 kb on - strand, within SMc02890at 245.863 kb on + strand, within SMc02890at 245.864 kb on - strand, within SMc02890at 245.864 kb on - strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.867 kb on - strand, within SMc02890at 245.867 kb on - strand, within SMc02890at 245.867 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.987 kb on - strand, within SMc02890at 245.987 kb on - strand, within SMc02890at 245.987 kb on - strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.131 kb on + strand, within SMc02890at 246.131 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.135 kb on - strand, within SMc02890at 246.175 kb on + strand, within SMc02890at 246.175 kb on + strand, within SMc02890at 246.175 kb on + strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.182 kb on + strand, within SMc02890at 246.183 kb on - strand, within SMc02890at 246.183 kb on - strand, within SMc02890at 246.451 kb on + strand, within SMc02890at 246.462 kb on + strand, within SMc02890at 246.463 kb on - strand, within SMc02890at 246.569 kb on - strand, within SMc02890at 246.569 kb on - strand, within SMc02890at 246.581 kb on + strand, within SMc02890at 246.584 kb on - strand, within SMc02890at 246.584 kb on - strand, within SMc02890at 246.655 kb on + strand, within SMc02890at 246.656 kb on - strand, within SMc02890at 246.817 kb on + strand, within SMc02890at 246.865 kb on + strand, within SMc02890at 246.865 kb on + strand, within SMc02890at 246.866 kb on - strand, within SMc02890at 246.919 kb on + strand, within SMc02890at 246.920 kb on - strand, within SMc02890at 246.937 kb on + strand, within SMc02890at 246.937 kb on + strand, within SMc02890at 246.961 kb on + strand, within SMc02890at 246.961 kb on + strand, within SMc02890at 246.961 kb on + strand, within SMc02890at 246.962 kb on - strand, within SMc02890at 247.003 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.006 kb on + strand, within SMc02890at 247.007 kb on - strand, within SMc02890at 247.007 kb on - strand, within SMc02890at 247.024 kb on + strand, within SMc02890at 247.025 kb on - strand, within SMc02890at 247.025 kb on - strand, within SMc02890at 247.049 kb on - strand, within SMc02890at 247.207 kb on + strand, within SMc02890at 247.265 kb on - strand, within SMc02890at 247.322 kb on - strandat 247.322 kb on - strand, within SMc02890at 247.354 kb on - strand, within SMc02890at 247.459 kb on + strandat 247.459 kb on + strandat 247.459 kb on + strandat 247.460 kb on - strandat 247.468 kb on + strandat 247.489 kb on + strandat 247.489 kb on + strandat 247.501 kb on + strandat 247.571 kb on + strandat 247.571 kb on + strandat 247.571 kb on + strandat 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.691 kb on - strand, within SMc02891at 247.815 kb on + strand, within SMc02891at 247.816 kb on - strand, within SMc02891at 247.816 kb on - strand, within SMc02891at 247.817 kb on + strand, within SMc02891at 247.817 kb on + strand, within SMc02891at 247.817 kb on + strand, within SMc02891at 247.818 kb on + strand, within SMc02891at 247.818 kb on - strand, within SMc02891at 247.818 kb on - strand, within SMc02891at 247.821 kb on + strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.822 kb on - strand, within SMc02891at 247.879 kb on + strand, within SMc02891at 248.184 kb on + strand, within SMc02891at 248.468 kb on - strand, within SMc02891

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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244,784 + SMc02889 0.39 +0.7
244,784 + SMc02889 0.39 -0.0
244,784 + SMc02889 0.39 +0.3
244,784 + SMc02889 0.39 +1.0
244,785 - SMc02889 0.39 -0.3
244,785 - SMc02889 0.39 +0.3
244,785 - SMc02889 0.39 +0.5
244,785 - SMc02889 0.39 +0.7
244,785 - SMc02889 0.39 +0.1
244,790 + SMc02889 0.39 -0.1
244,843 + SMc02889 0.44 +1.1
244,843 + SMc02889 0.44 +0.5
244,844 - SMc02889 0.44 -0.0
244,844 - SMc02889 0.44 -0.5
244,870 + SMc02889 0.46 -0.4
244,870 + SMc02889 0.46 +1.2
244,871 - SMc02889 0.46 +0.0
244,961 - SMc02889 0.53 +0.3
244,961 - SMc02889 0.53 -0.3
244,967 + SMc02889 0.53 +0.6
244,967 + SMc02889 0.53 -0.8
244,980 + SMc02889 0.54 +0.2
244,981 - SMc02889 0.54 -1.5
245,280 - SMc02889 0.78 -0.1
245,661 + -0.5
245,662 - -1.2
245,662 - -1.5
245,662 - +0.0
245,664 + +0.7
245,826 + SMc02890 0.14 +0.2
245,826 + SMc02890 0.14 -0.1
245,827 - SMc02890 0.14 -0.6
245,827 - SMc02890 0.14 +0.3
245,827 - SMc02890 0.14 +0.2
245,863 + SMc02890 0.15 +0.3
245,864 - SMc02890 0.15 +0.3
245,864 - SMc02890 0.15 -1.4
245,866 + SMc02890 0.16 +2.0
245,866 + SMc02890 0.16 +0.4
245,866 + SMc02890 0.16 -0.3
245,866 + SMc02890 0.16 -0.1
245,867 - SMc02890 0.16 +0.3
245,867 - SMc02890 0.16 +0.5
245,867 - SMc02890 0.16 -1.8
245,888 - SMc02890 0.17 +0.3
245,888 - SMc02890 0.17 +0.3
245,888 - SMc02890 0.17 +0.2
245,888 - SMc02890 0.17 +0.0
245,986 + SMc02890 0.22 +0.4
245,986 + SMc02890 0.22 +0.1
245,986 + SMc02890 0.22 +0.1
245,986 + SMc02890 0.22 +0.5
245,987 - SMc02890 0.22 -0.8
245,987 - SMc02890 0.22 +0.5
245,987 - SMc02890 0.22 +1.4
246,108 + SMc02890 0.28 +0.2
246,108 + SMc02890 0.28 -0.2
246,108 + SMc02890 0.28 +0.3
246,108 + SMc02890 0.28 +0.4
246,131 + SMc02890 0.29 -0.9
246,131 + SMc02890 0.29 +0.5
246,133 + SMc02890 0.29 -0.5
246,133 + SMc02890 0.29 +0.4
246,133 + SMc02890 0.29 -0.5
246,133 + SMc02890 0.29 -0.4
246,134 - SMc02890 0.29 +0.5
246,134 - SMc02890 0.29 -0.9
246,134 - SMc02890 0.29 -0.3
246,134 - SMc02890 0.29 +1.2
246,134 - SMc02890 0.29 +1.1
246,134 - SMc02890 0.29 -0.1
246,135 - SMc02890 0.29 -0.8
246,175 + SMc02890 0.31 -0.5
246,175 + SMc02890 0.31 +0.4
246,175 + SMc02890 0.31 +0.4
246,176 - SMc02890 0.31 +0.0
246,176 - SMc02890 0.31 +0.1
246,176 - SMc02890 0.31 +0.8
246,176 - SMc02890 0.31 -0.0
246,182 + SMc02890 0.31 -0.0
246,183 - SMc02890 0.31 -0.1
246,183 - SMc02890 0.31 -0.1
246,451 + SMc02890 0.45 -0.0
246,462 + SMc02890 0.45 -0.1
246,463 - SMc02890 0.45 -0.2
246,569 - SMc02890 0.51 +0.8
246,569 - SMc02890 0.51 +0.4
246,581 + SMc02890 0.51 -0.2
246,584 - SMc02890 0.51 -0.4
246,584 - SMc02890 0.51 +0.1
246,655 + SMc02890 0.55 -0.4
246,656 - SMc02890 0.55 -0.4
246,817 + SMc02890 0.63 -0.8
246,865 + SMc02890 0.66 +0.4
246,865 + SMc02890 0.66 -0.3
246,866 - SMc02890 0.66 +0.1
246,919 + SMc02890 0.68 -0.0
246,920 - SMc02890 0.68 -0.5
246,937 + SMc02890 0.69 -0.6
246,937 + SMc02890 0.69 -0.9
246,961 + SMc02890 0.70 -0.1
246,961 + SMc02890 0.70 -0.2
246,961 + SMc02890 0.70 -1.0
246,962 - SMc02890 0.70 -1.1
247,003 + SMc02890 0.72 -0.5
247,006 + SMc02890 0.73 +0.8
247,006 + SMc02890 0.73 -0.2
247,006 + SMc02890 0.73 +0.8
247,006 + SMc02890 0.73 -0.0
247,006 + SMc02890 0.73 +1.1
247,007 - SMc02890 0.73 +0.1
247,007 - SMc02890 0.73 +1.1
247,024 + SMc02890 0.73 +0.7
247,025 - SMc02890 0.74 +0.2
247,025 - SMc02890 0.74 +1.0
247,049 - SMc02890 0.75 -0.5
247,207 + SMc02890 0.83 +0.5
247,265 - SMc02890 0.86 -0.3
247,322 - +2.8
247,322 - SMc02890 0.88 +0.3
247,354 - SMc02890 0.90 -0.6
247,459 + +0.5
247,459 + -1.4
247,459 + +0.5
247,460 - -1.0
247,468 + -0.0
247,489 + -0.5
247,489 + +0.1
247,501 + -0.2
247,571 + -0.2
247,571 + -1.0
247,571 + +0.6
247,691 - SMc02891 0.11 -0.2
247,691 - SMc02891 0.11 +0.1
247,691 - SMc02891 0.11 -0.4
247,691 - SMc02891 0.11 -0.4
247,691 - SMc02891 0.11 +0.8
247,815 + SMc02891 0.21 -0.0
247,816 - SMc02891 0.22 -1.5
247,816 - SMc02891 0.22 -0.2
247,817 + SMc02891 0.22 +1.3
247,817 + SMc02891 0.22 +1.5
247,817 + SMc02891 0.22 -0.5
247,818 + SMc02891 0.22 +0.0
247,818 - SMc02891 0.22 -0.2
247,818 - SMc02891 0.22 -1.0
247,821 + SMc02891 0.22 -1.0
247,822 - SMc02891 0.22 -0.2
247,822 - SMc02891 0.22 -0.2
247,822 - SMc02891 0.22 +0.5
247,822 - SMc02891 0.22 -1.0
247,879 + SMc02891 0.27 +0.2
248,184 + SMc02891 0.53 -1.9
248,468 - SMc02891 0.78 -0.4

Or see this region's nucleotide sequence