Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02498 and SMc02497 are separated by 238 nucleotides SMc02497 and SMc02496 are separated by 122 nucleotides SMc02496 and SMc02495 are separated by 175 nucleotides SMc02495 and SMc02494 are separated by 80 nucleotides
SMc02498: SMc02498 - F0F1 ATP synthase subunit delta, at 3,295,122 to 3,295,688
SMc02498
SMc02497: SMc02497 - hypothetical protein, at 3,295,927 to 3,296,313
SMc02497
SMc02496: SMc02496 - primosome assembly protein PriA, at 3,296,436 to 3,298,640
SMc02496
SMc02495: SMc02495 - translaldolase, at 3,298,816 to 3,299,469
SMc02495
SMc02494: SMc02494 - hypothetical protein, at 3,299,550 to 3,301,079
SMc02494
Position (kb)
3296
3297
3298
3299 Strain fitness (log2 ratio)
-2
-1
0
1 at 3296.081 kb on + strand, within SMc02497 at 3296.081 kb on + strand, within SMc02497 at 3296.303 kb on + strand at 3296.382 kb on + strand at 3296.382 kb on + strand at 3296.387 kb on + strand at 3296.388 kb on - strand at 3296.388 kb on - strand at 3298.606 kb on - strand at 3299.221 kb on - strand, within SMc02495 at 3299.282 kb on - strand, within SMc02495 at 3299.614 kb on + strand at 3299.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,296,081 + SMc02497 0.40 -1.2 3,296,081 + SMc02497 0.40 -0.7 3,296,303 + +1.6 3,296,382 + -0.8 3,296,382 + +1.0 3,296,387 + -0.6 3,296,388 - +0.5 3,296,388 - +0.4 3,298,606 - +0.4 3,299,221 - SMc02495 0.62 -0.8 3,299,282 - SMc02495 0.71 -2.6 3,299,614 + +0.6 3,299,615 - -1.1
Or see this region's nucleotide sequence