Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01158 and SMc01157 are separated by 104 nucleotides SMc01157 and SMc01156 are separated by 87 nucleotides SMc01156 and SMc01155 are separated by 4 nucleotides SMc01155 and SMc01154 are separated by 145 nucleotides
SMc01158: SMc01158 - hypothetical protein, at 392,096 to 392,701
SMc01158
SMc01157: SMc01157 - oxidoreductase, at 392,806 to 393,585
SMc01157
SMc01156: SMc01156 - ubiquinone biosynthesis protein, at 393,673 to 395,247
SMc01156
SMc01155: SMc01155 - ubiquinone/menaquinone biosynthesis methyltransferase, at 395,252 to 396,064
SMc01155
SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115
SMc01154
Position (kb) 393
394
395
396 Strain fitness (log2 ratio) -1
0
1 at 392.861 kb on + strand at 392.862 kb on - strand at 392.862 kb on - strand at 392.862 kb on - strand at 393.571 kb on - strand at 393.571 kb on - strand at 393.585 kb on + strand at 393.585 kb on + strand at 393.585 kb on + strand at 393.585 kb on + strand at 393.585 kb on + strand at 393.586 kb on - strand at 396.128 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.187 kb on + strand at 396.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 392,861 + +1.0 392,862 - +0.5 392,862 - -0.0 392,862 - +1.7 393,571 - +0.0 393,571 - +0.1 393,585 + +0.3 393,585 + -1.1 393,585 + +0.9 393,585 + +1.2 393,585 + +0.3 393,586 - +0.3 396,128 - +1.1 396,130 - +0.1 396,130 - +0.4 396,130 - +0.8 396,130 - -0.2 396,130 - -0.1 396,130 - -0.4 396,130 - -0.8 396,187 + -0.1 396,188 - +0.1
Or see this region's nucleotide sequence