Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00900 and SMc00899 overlap by 1 nucleotides SMc00899 and SMc00898 are separated by 138 nucleotides SMc00898 and SMc00897 are separated by 151 nucleotides
SMc00900: SMc00900 - hypothetical protein, at 882,944 to 883,330
SMc00900
SMc00899: SMc00899 - hypothetical protein, at 883,330 to 883,584
SMc00899
SMc00898: SMc00898 - glutathione-regulated potassium-efflux system transmembrane protein, at 883,723 to 885,555
SMc00898
SMc00897: SMc00897 - PMBA protein, at 885,707 to 887,053
SMc00897
Position (kb) 883
884
885
886 Strain fitness (log2 ratio) -1
0
1 at 882.827 kb on - strand at 882.827 kb on - strand at 882.871 kb on + strand at 882.872 kb on - strand at 882.872 kb on - strand at 882.946 kb on - strand at 883.024 kb on - strand, within SMc00900 at 883.024 kb on - strand, within SMc00900 at 883.106 kb on - strand, within SMc00900 at 883.106 kb on - strand, within SMc00900 at 883.331 kb on + strand at 883.331 kb on + strand at 883.331 kb on + strand at 883.614 kb on - strand at 883.656 kb on + strand at 883.657 kb on - strand at 884.051 kb on + strand, within SMc00898 at 884.052 kb on - strand, within SMc00898 at 884.052 kb on - strand, within SMc00898 at 884.208 kb on - strand, within SMc00898 at 884.208 kb on - strand, within SMc00898 at 884.270 kb on - strand, within SMc00898 at 884.270 kb on - strand, within SMc00898 at 884.403 kb on + strand, within SMc00898 at 884.403 kb on + strand, within SMc00898 at 884.404 kb on - strand, within SMc00898 at 884.404 kb on - strand, within SMc00898 at 884.404 kb on - strand, within SMc00898 at 884.586 kb on + strand, within SMc00898 at 884.587 kb on - strand, within SMc00898 at 884.618 kb on + strand, within SMc00898 at 884.803 kb on + strand, within SMc00898 at 884.803 kb on + strand, within SMc00898 at 884.804 kb on - strand, within SMc00898 at 884.952 kb on - strand, within SMc00898 at 885.132 kb on + strand, within SMc00898 at 885.132 kb on + strand, within SMc00898 at 885.449 kb on + strand at 885.538 kb on + strand at 885.571 kb on + strand at 885.573 kb on + strand at 885.616 kb on - strand at 885.677 kb on + strand at 885.677 kb on + strand at 886.002 kb on - strand, within SMc00897 at 886.220 kb on + strand, within SMc00897 at 886.220 kb on + strand, within SMc00897 at 886.220 kb on + strand, within SMc00897 at 886.221 kb on - strand, within SMc00897 at 886.221 kb on - strand, within SMc00897 at 886.221 kb on - strand, within SMc00897 at 886.290 kb on - strand, within SMc00897 at 886.310 kb on + strand, within SMc00897
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 882,827 - +0.5 882,827 - -1.3 882,871 + +1.0 882,872 - -0.7 882,872 - -1.0 882,946 - -0.2 883,024 - SMc00900 0.21 +0.3 883,024 - SMc00900 0.21 -0.3 883,106 - SMc00900 0.42 +0.2 883,106 - SMc00900 0.42 -0.2 883,331 + -0.2 883,331 + -1.0 883,331 + +0.0 883,614 - +0.1 883,656 + -0.2 883,657 - -0.8 884,051 + SMc00898 0.18 +0.6 884,052 - SMc00898 0.18 -0.2 884,052 - SMc00898 0.18 +0.3 884,208 - SMc00898 0.26 -0.5 884,208 - SMc00898 0.26 +0.1 884,270 - SMc00898 0.30 +0.8 884,270 - SMc00898 0.30 -0.0 884,403 + SMc00898 0.37 +0.4 884,403 + SMc00898 0.37 -0.2 884,404 - SMc00898 0.37 -0.1 884,404 - SMc00898 0.37 +0.1 884,404 - SMc00898 0.37 -1.2 884,586 + SMc00898 0.47 +0.1 884,587 - SMc00898 0.47 +0.8 884,618 + SMc00898 0.49 +0.9 884,803 + SMc00898 0.59 +1.3 884,803 + SMc00898 0.59 -0.0 884,804 - SMc00898 0.59 +1.5 884,952 - SMc00898 0.67 +1.5 885,132 + SMc00898 0.77 +0.0 885,132 + SMc00898 0.77 -0.1 885,449 + +0.5 885,538 + +0.2 885,571 + -0.9 885,573 + +0.6 885,616 - -0.0 885,677 + -0.4 885,677 + +0.2 886,002 - SMc00897 0.22 +0.1 886,220 + SMc00897 0.38 -0.7 886,220 + SMc00897 0.38 +0.5 886,220 + SMc00897 0.38 +0.5 886,221 - SMc00897 0.38 +0.1 886,221 - SMc00897 0.38 -1.5 886,221 - SMc00897 0.38 -0.1 886,290 - SMc00897 0.43 -0.2 886,310 + SMc00897 0.45 -0.3
Or see this region's nucleotide sequence