Strain Fitness in Sinorhizobium meliloti 1021 around SMc00374

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00372 and SMc00373 are separated by 140 nucleotidesSMc00373 and SMc00374 are separated by 86 nucleotidesSMc00374 and SMc00375 are separated by 215 nucleotides SMc00372: SMc00372 - short chain dehydrogenase, at 326,479 to 327,249 SMc00372 SMc00373: SMc00373 - hypothetical protein, at 327,390 to 328,064 SMc00373 SMc00374: SMc00374 - oxidoreductase transmembrane protein, at 328,151 to 329,101 SMc00374 SMc00375: SMc00375 - oxidoreductase, at 329,317 to 330,303 SMc00375 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 327.169 kb on + strand, within SMc00372at 327.169 kb on + strand, within SMc00372at 327.189 kb on + strandat 327.189 kb on + strandat 327.190 kb on - strandat 327.273 kb on + strandat 327.355 kb on + strandat 327.355 kb on + strandat 327.356 kb on - strandat 327.356 kb on - strandat 327.356 kb on - strandat 327.436 kb on + strandat 327.437 kb on - strandat 327.437 kb on - strandat 327.437 kb on - strandat 327.695 kb on + strand, within SMc00373at 327.696 kb on - strand, within SMc00373at 327.828 kb on + strand, within SMc00373at 327.909 kb on + strand, within SMc00373at 327.910 kb on - strand, within SMc00373at 327.979 kb on - strand, within SMc00373at 328.063 kb on - strandat 328.063 kb on - strandat 328.063 kb on - strandat 328.108 kb on + strandat 328.178 kb on + strandat 328.467 kb on + strand, within SMc00374at 328.468 kb on - strand, within SMc00374at 328.521 kb on + strand, within SMc00374at 328.521 kb on + strand, within SMc00374at 328.522 kb on - strand, within SMc00374at 328.522 kb on - strand, within SMc00374at 328.546 kb on - strand, within SMc00374at 328.672 kb on + strand, within SMc00374at 328.672 kb on + strand, within SMc00374at 328.673 kb on - strand, within SMc00374at 328.698 kb on + strand, within SMc00374at 328.698 kb on + strand, within SMc00374at 328.698 kb on + strand, within SMc00374at 328.699 kb on - strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.704 kb on - strand, within SMc00374at 328.704 kb on - strand, within SMc00374at 328.731 kb on + strand, within SMc00374at 328.731 kb on + strand, within SMc00374at 328.731 kb on + strand, within SMc00374at 328.732 kb on - strand, within SMc00374at 328.732 kb on - strand, within SMc00374at 328.732 kb on - strand, within SMc00374at 328.741 kb on + strand, within SMc00374at 328.742 kb on - strand, within SMc00374at 328.743 kb on + strand, within SMc00374at 328.743 kb on + strand, within SMc00374at 328.744 kb on - strand, within SMc00374at 328.891 kb on + strand, within SMc00374at 328.891 kb on + strand, within SMc00374at 328.892 kb on - strand, within SMc00374at 328.944 kb on + strand, within SMc00374at 328.945 kb on - strand, within SMc00374at 328.945 kb on - strand, within SMc00374at 329.226 kb on + strandat 329.230 kb on + strandat 329.483 kb on - strand, within SMc00375at 329.522 kb on - strand, within SMc00375at 329.522 kb on - strand, within SMc00375at 329.524 kb on - strand, within SMc00375at 329.588 kb on + strand, within SMc00375at 329.589 kb on - strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.681 kb on - strand, within SMc00375at 329.681 kb on - strand, within SMc00375at 329.681 kb on - strand, within SMc00375at 329.682 kb on + strand, within SMc00375at 329.682 kb on + strand, within SMc00375at 329.682 kb on + strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.692 kb on + strand, within SMc00375at 329.693 kb on - strand, within SMc00375at 329.693 kb on - strand, within SMc00375at 329.776 kb on + strand, within SMc00375at 329.852 kb on - strand, within SMc00375at 329.944 kb on + strand, within SMc00375at 329.989 kb on + strand, within SMc00375at 329.989 kb on + strand, within SMc00375at 329.989 kb on + strand, within SMc00375at 329.990 kb on - strand, within SMc00375at 330.046 kb on + strand, within SMc00375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
327,169 + SMc00372 0.89 -1.1
327,169 + SMc00372 0.89 +0.4
327,189 + +0.7
327,189 + -0.3
327,190 - -0.5
327,273 + -0.6
327,355 + -0.4
327,355 + +0.9
327,356 - -0.1
327,356 - +0.0
327,356 - +0.1
327,436 + -0.5
327,437 - -0.1
327,437 - +0.2
327,437 - -0.7
327,695 + SMc00373 0.45 -1.1
327,696 - SMc00373 0.45 -0.4
327,828 + SMc00373 0.65 -0.3
327,909 + SMc00373 0.77 -0.7
327,910 - SMc00373 0.77 +0.1
327,979 - SMc00373 0.87 +0.8
328,063 - -0.8
328,063 - +0.8
328,063 - -0.0
328,108 + +0.5
328,178 + -0.9
328,467 + SMc00374 0.33 +0.8
328,468 - SMc00374 0.33 -0.1
328,521 + SMc00374 0.39 +0.5
328,521 + SMc00374 0.39 -0.2
328,522 - SMc00374 0.39 +0.5
328,522 - SMc00374 0.39 +0.0
328,546 - SMc00374 0.42 -1.2
328,672 + SMc00374 0.55 +1.3
328,672 + SMc00374 0.55 +0.9
328,673 - SMc00374 0.55 -0.4
328,698 + SMc00374 0.58 -0.3
328,698 + SMc00374 0.58 +0.2
328,698 + SMc00374 0.58 -0.4
328,699 - SMc00374 0.58 -0.0
328,703 + SMc00374 0.58 +0.2
328,703 + SMc00374 0.58 +0.1
328,703 + SMc00374 0.58 +0.6
328,703 + SMc00374 0.58 +0.3
328,703 + SMc00374 0.58 +0.2
328,704 - SMc00374 0.58 -0.1
328,704 - SMc00374 0.58 +0.1
328,731 + SMc00374 0.61 -0.2
328,731 + SMc00374 0.61 +2.7
328,731 + SMc00374 0.61 -0.0
328,732 - SMc00374 0.61 +0.7
328,732 - SMc00374 0.61 +0.3
328,732 - SMc00374 0.61 -0.2
328,741 + SMc00374 0.62 -0.1
328,742 - SMc00374 0.62 -0.2
328,743 + SMc00374 0.62 +0.1
328,743 + SMc00374 0.62 +0.1
328,744 - SMc00374 0.62 +0.5
328,891 + SMc00374 0.78 +0.1
328,891 + SMc00374 0.78 +0.5
328,892 - SMc00374 0.78 -0.0
328,944 + SMc00374 0.83 +1.5
328,945 - SMc00374 0.83 -0.0
328,945 - SMc00374 0.83 -0.1
329,226 + -0.3
329,230 + -0.1
329,483 - SMc00375 0.17 +0.1
329,522 - SMc00375 0.21 +0.0
329,522 - SMc00375 0.21 -0.2
329,524 - SMc00375 0.21 -0.4
329,588 + SMc00375 0.27 -0.2
329,589 - SMc00375 0.28 +0.6
329,680 + SMc00375 0.37 +0.1
329,680 + SMc00375 0.37 +0.2
329,680 + SMc00375 0.37 -0.2
329,680 + SMc00375 0.37 -0.1
329,681 - SMc00375 0.37 -0.9
329,681 - SMc00375 0.37 -0.1
329,681 - SMc00375 0.37 -0.1
329,682 + SMc00375 0.37 +0.1
329,682 + SMc00375 0.37 +0.4
329,682 + SMc00375 0.37 -0.3
329,683 - SMc00375 0.37 -0.3
329,683 - SMc00375 0.37 -0.2
329,683 - SMc00375 0.37 -2.2
329,683 - SMc00375 0.37 -0.8
329,683 - SMc00375 0.37 +0.0
329,692 + SMc00375 0.38 -0.5
329,693 - SMc00375 0.38 -1.1
329,693 - SMc00375 0.38 -0.8
329,776 + SMc00375 0.47 +0.2
329,852 - SMc00375 0.54 +0.4
329,944 + SMc00375 0.64 +0.1
329,989 + SMc00375 0.68 -0.1
329,989 + SMc00375 0.68 -0.1
329,989 + SMc00375 0.68 -1.9
329,990 - SMc00375 0.68 -1.0
330,046 + SMc00375 0.74 -0.8

Or see this region's nucleotide sequence