Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00013 and SMc00014 are separated by 194 nucleotides SMc00014 and SMc00085 are separated by 7 nucleotides SMc00085 and SMc00016 are separated by 51 nucleotides
SMc00013: SMc00013 - cytochrome C oxidase subunit III transmembrane protein, at 996,489 to 997,367
SMc00013
SMc00014: SMc00014 - hypothetical protein, at 997,562 to 997,945
SMc00014
SMc00085: SMc00085 - cytochrome oxidase complex biogenesis factor transmembrane protein, at 997,953 to 998,681
SMc00085
SMc00016: SMc00016 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 998,733 to 999,785
SMc00016
Position (kb) 997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 996.607 kb on - strand, within SMc00013 at 996.691 kb on - strand, within SMc00013 at 997.092 kb on + strand, within SMc00013 at 997.326 kb on + strand at 997.327 kb on - strand at 997.374 kb on + strand at 997.374 kb on + strand at 997.428 kb on - strand at 997.428 kb on - strand at 997.434 kb on + strand at 997.434 kb on + strand at 997.435 kb on - strand at 997.435 kb on - strand at 997.873 kb on + strand, within SMc00014 at 998.247 kb on + strand, within SMc00085 at 998.248 kb on - strand, within SMc00085 at 998.265 kb on - strand, within SMc00085 at 998.265 kb on - strand, within SMc00085 at 998.452 kb on - strand, within SMc00085 at 998.452 kb on - strand, within SMc00085 at 998.469 kb on - strand, within SMc00085 at 998.520 kb on - strand, within SMc00085 at 998.604 kb on + strand, within SMc00085 at 998.658 kb on + strand at 998.658 kb on + strand at 998.658 kb on + strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.721 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.725 kb on + strand at 998.725 kb on + strand at 998.725 kb on + strand at 998.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 996,607 - SMc00013 0.13 -1.0 996,691 - SMc00013 0.23 -2.0 997,092 + SMc00013 0.69 -2.3 997,326 + +0.2 997,327 - -0.5 997,374 + +0.8 997,374 + +0.1 997,428 - -0.4 997,428 - -0.1 997,434 + -0.4 997,434 + -2.7 997,435 - -0.0 997,435 - -1.0 997,873 + SMc00014 0.81 -0.4 998,247 + SMc00085 0.40 +0.3 998,248 - SMc00085 0.40 +0.3 998,265 - SMc00085 0.43 -0.9 998,265 - SMc00085 0.43 -1.9 998,452 - SMc00085 0.68 -0.9 998,452 - SMc00085 0.68 -1.0 998,469 - SMc00085 0.71 -1.3 998,520 - SMc00085 0.78 -0.6 998,604 + SMc00085 0.89 -1.4 998,658 + -0.4 998,658 + -0.5 998,658 + +0.0 998,659 - +0.5 998,659 - -1.5 998,659 - +1.7 998,659 - +1.1 998,659 - +0.2 998,721 + +1.1 998,723 + +0.3 998,723 + -0.9 998,723 + +0.6 998,723 + -0.5 998,723 + -0.7 998,725 + +0.1 998,725 + -0.4 998,725 + -0.3 998,725 + -1.0
Or see this region's nucleotide sequence