Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1232 and SMa1233 are separated by 3 nucleotides SMa1233 and SMa1236 overlap by 31 nucleotides SMa1236 and SMa1239 overlap by 26 nucleotides SMa1239 and SMa1240 overlap by 8 nucleotides SMa1240 and SMa1241 are separated by 7 nucleotides
SMa1232: SMa1232 - NapC membrane-bound tetraheme cytochrome c subunit, at 676,020 to 676,721
SMa1232
SMa1233: SMa1233 - NapB periplasmic nitrate reductase cytochrome c- type subunit, at 676,725 to 677,228
SMa1233
SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702
SMa1236
SMa1239: SMa1239 - NapD component of periplasmic nitrate reductase, at 679,677 to 679,964
SMa1239
SMa1240: SMa1240 - NapF ferredoxin component of periplasmic nitrate reductase, at 679,957 to 680,457
SMa1240
SMa1241: SMa1241 - NapE component of periplasmic nitrate reductase, at 680,465 to 680,650
SMa1241
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -2
-1
0
1 at 676.213 kb on + strand, within SMa1232 at 676.374 kb on + strand, within SMa1232 at 676.375 kb on - strand, within SMa1232 at 676.506 kb on - strand, within SMa1232 at 676.726 kb on + strand at 676.779 kb on - strand, within SMa1233 at 676.879 kb on + strand, within SMa1233 at 676.879 kb on + strand, within SMa1233 at 676.880 kb on - strand, within SMa1233 at 677.312 kb on + strand at 677.446 kb on + strand at 677.476 kb on - strand, within SMa1236 at 677.554 kb on - strand, within SMa1236 at 677.586 kb on + strand, within SMa1236 at 677.628 kb on + strand, within SMa1236 at 677.659 kb on - strand, within SMa1236 at 677.739 kb on + strand, within SMa1236 at 677.749 kb on - strand, within SMa1236 at 677.790 kb on + strand, within SMa1236 at 677.791 kb on - strand, within SMa1236 at 677.791 kb on - strand, within SMa1236 at 677.817 kb on + strand, within SMa1236 at 677.850 kb on + strand, within SMa1236 at 677.850 kb on + strand, within SMa1236 at 677.913 kb on + strand, within SMa1236 at 677.914 kb on - strand, within SMa1236 at 678.064 kb on + strand, within SMa1236 at 678.064 kb on + strand, within SMa1236 at 678.065 kb on - strand, within SMa1236 at 678.156 kb on + strand, within SMa1236 at 678.204 kb on + strand, within SMa1236 at 678.204 kb on + strand, within SMa1236 at 678.205 kb on - strand, within SMa1236 at 678.205 kb on - strand, within SMa1236 at 678.428 kb on + strand, within SMa1236 at 678.429 kb on - strand, within SMa1236 at 678.526 kb on - strand, within SMa1236 at 678.526 kb on - strand, within SMa1236 at 678.575 kb on - strand, within SMa1236 at 678.632 kb on + strand, within SMa1236 at 678.633 kb on - strand, within SMa1236 at 678.633 kb on - strand, within SMa1236 at 678.633 kb on - strand, within SMa1236 at 678.790 kb on - strand, within SMa1236 at 678.824 kb on - strand, within SMa1236 at 678.824 kb on - strand, within SMa1236 at 678.866 kb on - strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.883 kb on - strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.093 kb on - strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.138 kb on - strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.417 kb on - strand, within SMa1236 at 679.437 kb on + strand, within SMa1236 at 679.575 kb on - strand at 679.639 kb on + strand at 679.824 kb on + strand, within SMa1239 at 679.825 kb on - strand, within SMa1239 at 679.937 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 680.055 kb on + strand, within SMa1240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 676,213 + SMa1232 0.27 +0.7 676,374 + SMa1232 0.50 +0.3 676,375 - SMa1232 0.51 -0.2 676,506 - SMa1232 0.69 -0.3 676,726 + -0.0 676,779 - SMa1233 0.11 -1.1 676,879 + SMa1233 0.31 -0.0 676,879 + SMa1233 0.31 -0.3 676,880 - SMa1233 0.31 +0.0 677,312 + -0.2 677,446 + +0.5 677,476 - SMa1236 0.11 -0.4 677,554 - SMa1236 0.14 +0.4 677,586 + SMa1236 0.15 +0.1 677,628 + SMa1236 0.17 -0.4 677,659 - SMa1236 0.18 -0.6 677,739 + SMa1236 0.22 -0.6 677,749 - SMa1236 0.22 +0.2 677,790 + SMa1236 0.24 +0.3 677,791 - SMa1236 0.24 +0.6 677,791 - SMa1236 0.24 +0.6 677,817 + SMa1236 0.25 +0.9 677,850 + SMa1236 0.26 +0.4 677,850 + SMa1236 0.26 +0.7 677,913 + SMa1236 0.29 +0.1 677,914 - SMa1236 0.29 +0.5 678,064 + SMa1236 0.35 +0.2 678,064 + SMa1236 0.35 -0.6 678,065 - SMa1236 0.35 +0.4 678,156 + SMa1236 0.38 -1.3 678,204 + SMa1236 0.40 +0.1 678,204 + SMa1236 0.40 +0.3 678,205 - SMa1236 0.40 +0.9 678,205 - SMa1236 0.40 -0.0 678,428 + SMa1236 0.49 +0.1 678,429 - SMa1236 0.49 +0.4 678,526 - SMa1236 0.53 -0.1 678,526 - SMa1236 0.53 +0.3 678,575 - SMa1236 0.55 -0.5 678,632 + SMa1236 0.57 -0.2 678,633 - SMa1236 0.57 +0.0 678,633 - SMa1236 0.57 +0.9 678,633 - SMa1236 0.57 +0.6 678,790 - SMa1236 0.64 +0.2 678,824 - SMa1236 0.65 +0.5 678,824 - SMa1236 0.65 -0.4 678,866 - SMa1236 0.67 +0.4 678,882 + SMa1236 0.67 +0.3 678,882 + SMa1236 0.67 +0.6 678,882 + SMa1236 0.67 +0.3 678,882 + SMa1236 0.67 -1.0 678,883 - SMa1236 0.67 +0.7 679,092 + SMa1236 0.76 -0.1 679,092 + SMa1236 0.76 -0.0 679,093 - SMa1236 0.76 -0.2 679,137 + SMa1236 0.77 +0.6 679,137 + SMa1236 0.77 +0.0 679,138 - SMa1236 0.77 +0.6 679,416 + SMa1236 0.89 -1.5 679,416 + SMa1236 0.89 +0.9 679,416 + SMa1236 0.89 -0.1 679,417 - SMa1236 0.89 -0.4 679,437 + SMa1236 0.89 +0.1 679,575 - +0.5 679,639 + -0.6 679,824 + SMa1239 0.51 -0.3 679,825 - SMa1239 0.51 -1.9 679,937 + -0.9 679,942 + +0.2 679,942 + -0.8 679,942 + +0.1 680,055 + SMa1240 0.20 +0.7
Or see this region's nucleotide sequence