Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1139 and SMa1141 are separated by 128 nucleotides SMa1141 and SMa1142 overlap by 1 nucleotides SMa1142 and SMa1146 are separated by 139 nucleotides
SMa1139: SMa1139 - hypothetical protein, at 620,850 to 621,116
SMa1139
SMa1141: SMa1141 - FNR/CRP family transcriptional regulator, at 621,245 to 622,009
SMa1141
SMa1142: SMa1142 - FixL-related histidine kinase, at 622,009 to 623,595
SMa1142
SMa1146: SMa1146 - hypothetical protein, at 623,735 to 626,434
SMa1146
Position (kb) 622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 621.153 kb on + strand at 621.153 kb on + strand at 621.153 kb on + strand at 621.158 kb on + strand at 621.159 kb on - strand at 621.163 kb on + strand at 621.164 kb on - strand at 621.262 kb on + strand at 621.331 kb on - strand, within SMa1141 at 621.403 kb on + strand, within SMa1141 at 621.424 kb on + strand, within SMa1141 at 621.424 kb on + strand, within SMa1141 at 621.522 kb on - strand, within SMa1141 at 621.522 kb on - strand, within SMa1141 at 621.522 kb on - strand, within SMa1141 at 621.525 kb on + strand, within SMa1141 at 621.528 kb on - strand, within SMa1141 at 621.528 kb on - strand, within SMa1141 at 621.832 kb on + strand, within SMa1141 at 621.833 kb on - strand, within SMa1141 at 621.834 kb on + strand, within SMa1141 at 621.959 kb on + strand at 621.974 kb on - strand at 622.063 kb on - strand at 622.143 kb on - strand at 622.202 kb on - strand, within SMa1142 at 622.226 kb on + strand, within SMa1142 at 622.227 kb on - strand, within SMa1142 at 622.289 kb on - strand, within SMa1142 at 622.289 kb on - strand, within SMa1142 at 622.289 kb on - strand, within SMa1142 at 622.607 kb on + strand, within SMa1142 at 622.608 kb on - strand, within SMa1142 at 622.661 kb on + strand, within SMa1142 at 622.763 kb on + strand, within SMa1142 at 622.763 kb on + strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.835 kb on + strand, within SMa1142 at 622.906 kb on - strand, within SMa1142 at 622.937 kb on + strand, within SMa1142 at 622.960 kb on + strand, within SMa1142 at 622.961 kb on - strand, within SMa1142 at 622.961 kb on - strand, within SMa1142 at 622.961 kb on - strand, within SMa1142 at 623.086 kb on + strand, within SMa1142 at 623.115 kb on + strand, within SMa1142 at 623.115 kb on + strand, within SMa1142 at 623.115 kb on + strand, within SMa1142 at 623.116 kb on - strand, within SMa1142 at 623.126 kb on - strand, within SMa1142 at 623.126 kb on - strand, within SMa1142 at 623.127 kb on + strand, within SMa1142 at 623.232 kb on + strand, within SMa1142 at 623.409 kb on - strand, within SMa1142 at 623.409 kb on - strand, within SMa1142 at 623.423 kb on + strand, within SMa1142 at 623.424 kb on - strand, within SMa1142 at 623.494 kb on + strand at 623.548 kb on + strand at 623.618 kb on + strand at 623.618 kb on + strand at 623.624 kb on + strand at 623.634 kb on + strand at 623.635 kb on - strand at 623.638 kb on - strand at 623.638 kb on - strand at 623.912 kb on + strand at 624.006 kb on + strand, within SMa1146 at 624.006 kb on + strand, within SMa1146 at 624.006 kb on + strand, within SMa1146 at 624.007 kb on - strand, within SMa1146 at 624.043 kb on + strand, within SMa1146 at 624.109 kb on - strand, within SMa1146 at 624.257 kb on + strand, within SMa1146 at 624.331 kb on - strand, within SMa1146 at 624.331 kb on - strand, within SMa1146 at 624.366 kb on - strand, within SMa1146 at 624.490 kb on + strand, within SMa1146 at 624.491 kb on - strand, within SMa1146 at 624.491 kb on - strand, within SMa1146 at 624.491 kb on - strand, within SMa1146 at 624.491 kb on - strand, within SMa1146 at 624.491 kb on - strand, within SMa1146
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 621,153 + +0.3 621,153 + -0.2 621,153 + +0.5 621,158 + -0.3 621,159 - +0.7 621,163 + +0.9 621,164 - +0.8 621,262 + +0.1 621,331 - SMa1141 0.11 +0.6 621,403 + SMa1141 0.21 -0.5 621,424 + SMa1141 0.23 +0.8 621,424 + SMa1141 0.23 +0.1 621,522 - SMa1141 0.36 -0.2 621,522 - SMa1141 0.36 -1.5 621,522 - SMa1141 0.36 +0.6 621,525 + SMa1141 0.37 +0.9 621,528 - SMa1141 0.37 +0.5 621,528 - SMa1141 0.37 +0.5 621,832 + SMa1141 0.77 -0.1 621,833 - SMa1141 0.77 -2.8 621,834 + SMa1141 0.77 +1.3 621,959 + +0.7 621,974 - +1.7 622,063 - +0.3 622,143 - -0.4 622,202 - SMa1142 0.12 +1.3 622,226 + SMa1142 0.14 +0.8 622,227 - SMa1142 0.14 +0.6 622,289 - SMa1142 0.18 +0.3 622,289 - SMa1142 0.18 +1.2 622,289 - SMa1142 0.18 +0.1 622,607 + SMa1142 0.38 +0.9 622,608 - SMa1142 0.38 +1.8 622,661 + SMa1142 0.41 -0.0 622,763 + SMa1142 0.48 -0.1 622,763 + SMa1142 0.48 +0.3 622,764 - SMa1142 0.48 -0.1 622,764 - SMa1142 0.48 -0.0 622,764 - SMa1142 0.48 +0.5 622,764 - SMa1142 0.48 +0.2 622,764 - SMa1142 0.48 -0.1 622,835 + SMa1142 0.52 +0.1 622,906 - SMa1142 0.57 -0.9 622,937 + SMa1142 0.58 +0.8 622,960 + SMa1142 0.60 +0.6 622,961 - SMa1142 0.60 +0.0 622,961 - SMa1142 0.60 +0.5 622,961 - SMa1142 0.60 -0.5 623,086 + SMa1142 0.68 +0.9 623,115 + SMa1142 0.70 +0.3 623,115 + SMa1142 0.70 +0.2 623,115 + SMa1142 0.70 +1.3 623,116 - SMa1142 0.70 +0.1 623,126 - SMa1142 0.70 +0.2 623,126 - SMa1142 0.70 +0.9 623,127 + SMa1142 0.70 -0.1 623,232 + SMa1142 0.77 +0.1 623,409 - SMa1142 0.88 -0.2 623,409 - SMa1142 0.88 -0.0 623,423 + SMa1142 0.89 +0.1 623,424 - SMa1142 0.89 -1.7 623,494 + +1.0 623,548 + -0.2 623,618 + -0.0 623,618 + -0.7 623,624 + +0.2 623,634 + +2.1 623,635 - -0.5 623,638 - +0.4 623,638 - +0.4 623,912 + +0.6 624,006 + SMa1146 0.10 +0.8 624,006 + SMa1146 0.10 +0.7 624,006 + SMa1146 0.10 +0.7 624,007 - SMa1146 0.10 +0.2 624,043 + SMa1146 0.11 -0.2 624,109 - SMa1146 0.14 +0.7 624,257 + SMa1146 0.19 +0.5 624,331 - SMa1146 0.22 -0.4 624,331 - SMa1146 0.22 +0.6 624,366 - SMa1146 0.23 +0.5 624,490 + SMa1146 0.28 -0.2 624,491 - SMa1146 0.28 -0.7 624,491 - SMa1146 0.28 +0.2 624,491 - SMa1146 0.28 -0.3 624,491 - SMa1146 0.28 +0.1 624,491 - SMa1146 0.28 -1.2
Or see this region's nucleotide sequence