Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0772 and SMa0773 are separated by 387 nucleotides SMa0773 and SMa0774 are separated by 6 nucleotides
SMa0772: SMa0772 - NodL Nod factor acetyltransferase, at 418,345 to 418,896
SMa0772
SMa0773: SMa0773 - NoeA host specific nodulation protein, at 419,284 to 420,714
SMa0773
SMa0774: SMa0774 - NoeB host specific nodulation protein, at 420,721 to 422,382
SMa0774
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.292 kb on - strand at 418.292 kb on - strand at 418.455 kb on + strand, within SMa0772 at 418.456 kb on - strand, within SMa0772 at 418.559 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.593 kb on + strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.941 kb on - strand at 419.064 kb on - strand at 419.102 kb on + strand at 419.102 kb on + strand at 419.103 kb on - strand at 419.133 kb on - strand at 419.151 kb on + strand at 419.151 kb on + strand at 419.152 kb on - strand at 419.240 kb on + strand at 419.447 kb on + strand, within SMa0773 at 419.530 kb on - strand, within SMa0773 at 419.680 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.770 kb on - strand, within SMa0773 at 419.962 kb on - strand, within SMa0773 at 419.981 kb on + strand, within SMa0773 at 419.982 kb on - strand, within SMa0773 at 420.106 kb on + strand, within SMa0773 at 420.125 kb on - strand, within SMa0773 at 420.158 kb on - strand, within SMa0773 at 420.213 kb on + strand, within SMa0773 at 420.237 kb on - strand, within SMa0773 at 420.666 kb on - strand at 420.668 kb on + strand at 420.668 kb on + strand at 420.669 kb on - strand at 420.744 kb on - strand at 420.744 kb on - strand at 420.755 kb on + strand at 420.755 kb on + strand at 420.796 kb on + strand at 420.796 kb on + strand at 420.797 kb on - strand at 420.799 kb on - strand at 421.040 kb on + strand, within SMa0774 at 421.041 kb on - strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.050 kb on + strand, within SMa0774 at 421.084 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.144 kb on - strand, within SMa0774 at 421.183 kb on + strand, within SMa0774 at 421.232 kb on + strand, within SMa0774 at 421.520 kb on + strand, within SMa0774 at 421.713 kb on + strand, within SMa0774
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 418,292 - +1.1 418,292 - +0.1 418,455 + SMa0772 0.20 +0.4 418,456 - SMa0772 0.20 +1.3 418,559 - SMa0772 0.39 -0.7 418,592 - SMa0772 0.45 +0.8 418,592 - SMa0772 0.45 +0.2 418,592 - SMa0772 0.45 -0.7 418,593 + SMa0772 0.45 +0.3 418,676 - SMa0772 0.60 +0.7 418,676 - SMa0772 0.60 -1.3 418,941 - -0.4 419,064 - -0.1 419,102 + -0.2 419,102 + -0.2 419,103 - +0.3 419,133 - -0.1 419,151 + +0.1 419,151 + -0.2 419,152 - +0.3 419,240 + +1.1 419,447 + SMa0773 0.11 +0.2 419,530 - SMa0773 0.17 +0.5 419,680 + SMa0773 0.28 -0.3 419,769 + SMa0773 0.34 -1.0 419,769 + SMa0773 0.34 +0.2 419,770 - SMa0773 0.34 -0.7 419,962 - SMa0773 0.47 -0.5 419,981 + SMa0773 0.49 -0.8 419,982 - SMa0773 0.49 +0.1 420,106 + SMa0773 0.57 -1.5 420,125 - SMa0773 0.59 +0.1 420,158 - SMa0773 0.61 -0.2 420,213 + SMa0773 0.65 +0.2 420,237 - SMa0773 0.67 -0.7 420,666 - +0.3 420,668 + -0.1 420,668 + +0.2 420,669 - +0.5 420,744 - -0.1 420,744 - +2.6 420,755 + -1.1 420,755 + -0.2 420,796 + -1.4 420,796 + +0.0 420,797 - -0.4 420,799 - -0.6 421,040 + SMa0774 0.19 -0.2 421,041 - SMa0774 0.19 +0.1 421,044 + SMa0774 0.19 +0.5 421,044 + SMa0774 0.19 -1.5 421,050 + SMa0774 0.20 -0.6 421,084 - SMa0774 0.22 -0.1 421,120 - SMa0774 0.24 +0.7 421,120 - SMa0774 0.24 -2.0 421,144 - SMa0774 0.25 +0.3 421,183 + SMa0774 0.28 -0.5 421,232 + SMa0774 0.31 +0.5 421,520 + SMa0774 0.48 -2.0 421,713 + SMa0774 0.60 +0.6
Or see this region's nucleotide sequence