Strain Fitness in Sinorhizobium meliloti 1021 around SMa0612

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0610 and SMa0612 are separated by 304 nucleotidesSMa0612 and SMa0615 are separated by 4 nucleotidesSMa0615 and SMa0616 are separated by 22 nucleotidesSMa0616 and SMa0617 overlap by 10 nucleotides SMa0610: SMa0610 - hypothetical protein, at 325,807 to 326,667 SMa0610 SMa0612: SMa0612 - cbb3-type cytochrome c oxidase subunit I, at 326,972 to 328,627 SMa0612 SMa0615: SMa0615 - cbb3-type cytochrome c oxidase subunit II, at 328,632 to 329,384 SMa0615 SMa0616: SMa0616 - FixQ3 nitrogen fixation protein, at 329,407 to 329,577 SMa0616 SMa0617: SMa0617 - FixP3 Diheme c-type cytochrome, at 329,568 to 330,449 SMa0617 Position (kb) 326 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 325.998 kb on + strand, within SMa0610at 325.999 kb on - strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.242 kb on + strand, within SMa0610at 326.259 kb on - strand, within SMa0610at 326.269 kb on + strand, within SMa0610at 326.269 kb on + strand, within SMa0610at 326.270 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.382 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.390 kb on - strand, within SMa0610at 326.390 kb on - strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.567 kb on - strand, within SMa0610at 326.583 kb on - strandat 326.598 kb on + strandat 326.665 kb on + strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.927 kb on + strandat 326.928 kb on - strandat 326.928 kb on - strandat 327.031 kb on + strandat 327.032 kb on - strandat 327.104 kb on + strandat 327.106 kb on + strandat 327.122 kb on + strandat 327.123 kb on - strandat 327.180 kb on - strand, within SMa0612at 327.180 kb on - strand, within SMa0612at 327.334 kb on + strand, within SMa0612at 327.522 kb on - strand, within SMa0612at 327.540 kb on - strand, within SMa0612at 327.576 kb on - strand, within SMa0612at 327.587 kb on + strand, within SMa0612at 327.587 kb on + strand, within SMa0612at 327.587 kb on + strand, within SMa0612at 327.626 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.830 kb on + strand, within SMa0612at 327.830 kb on + strand, within SMa0612at 327.830 kb on + strand, within SMa0612at 327.830 kb on + strand, within SMa0612at 327.831 kb on - strand, within SMa0612at 327.833 kb on + strand, within SMa0612at 327.834 kb on - strand, within SMa0612at 327.834 kb on - strand, within SMa0612at 327.834 kb on - strand, within SMa0612at 327.912 kb on - strand, within SMa0612at 327.912 kb on - strand, within SMa0612at 327.941 kb on + strand, within SMa0612at 327.942 kb on - strand, within SMa0612at 327.942 kb on - strand, within SMa0612at 327.942 kb on - strand, within SMa0612at 328.088 kb on - strand, within SMa0612at 328.172 kb on + strand, within SMa0612at 328.172 kb on + strand, within SMa0612at 328.173 kb on - strand, within SMa0612at 328.174 kb on + strand, within SMa0612at 328.236 kb on - strand, within SMa0612at 328.236 kb on - strand, within SMa0612at 328.236 kb on - strand, within SMa0612at 328.247 kb on + strand, within SMa0612at 328.286 kb on + strand, within SMa0612at 328.286 kb on + strand, within SMa0612at 328.338 kb on + strand, within SMa0612at 328.339 kb on - strand, within SMa0612at 328.343 kb on + strand, within SMa0612at 328.343 kb on + strand, within SMa0612at 328.343 kb on + strand, within SMa0612at 328.344 kb on - strand, within SMa0612at 328.344 kb on - strand, within SMa0612at 328.344 kb on - strand, within SMa0612at 328.397 kb on + strand, within SMa0612at 328.397 kb on + strand, within SMa0612at 328.397 kb on + strand, within SMa0612at 328.398 kb on - strand, within SMa0612at 328.398 kb on - strand, within SMa0612at 328.398 kb on - strand, within SMa0612at 328.398 kb on - strand, within SMa0612at 328.398 kb on - strand, within SMa0612at 328.400 kb on - strand, within SMa0612at 328.422 kb on - strand, within SMa0612at 328.451 kb on + strand, within SMa0612at 328.451 kb on + strand, within SMa0612at 328.452 kb on - strand, within SMa0612at 328.457 kb on + strand, within SMa0612at 328.457 kb on + strand, within SMa0612at 328.458 kb on - strand, within SMa0612at 328.458 kb on - strand, within SMa0612at 328.461 kb on - strand, within SMa0612at 328.462 kb on + strandat 328.517 kb on + strandat 328.518 kb on - strandat 328.815 kb on + strand, within SMa0615at 328.816 kb on - strand, within SMa0615at 328.833 kb on + strand, within SMa0615at 328.834 kb on - strand, within SMa0615at 328.917 kb on + strand, within SMa0615at 328.972 kb on + strand, within SMa0615at 328.973 kb on - strand, within SMa0615at 328.984 kb on - strand, within SMa0615at 328.984 kb on - strand, within SMa0615at 329.002 kb on + strand, within SMa0615at 329.002 kb on + strand, within SMa0615at 329.055 kb on + strand, within SMa0615at 329.136 kb on + strand, within SMa0615at 329.337 kb on + strandat 329.338 kb on - strandat 329.338 kb on - strandat 329.338 kb on - strandat 329.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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325,998 + SMa0610 0.22 -0.0
325,999 - SMa0610 0.22 +0.8
326,060 + SMa0610 0.29 -0.4
326,060 + SMa0610 0.29 +0.4
326,242 + SMa0610 0.51 +1.1
326,259 - SMa0610 0.52 -0.3
326,269 + SMa0610 0.54 +0.1
326,269 + SMa0610 0.54 -0.1
326,270 - SMa0610 0.54 -0.3
326,327 - SMa0610 0.60 -0.8
326,327 - SMa0610 0.60 -0.4
326,327 - SMa0610 0.60 +0.1
326,382 + SMa0610 0.67 +0.0
326,389 + SMa0610 0.68 -0.1
326,389 + SMa0610 0.68 +0.7
326,389 + SMa0610 0.68 +0.3
326,390 - SMa0610 0.68 -0.3
326,390 - SMa0610 0.68 -1.2
326,566 + SMa0610 0.88 -0.1
326,566 + SMa0610 0.88 -0.6
326,566 + SMa0610 0.88 +0.6
326,567 - SMa0610 0.88 +1.9
326,583 - -0.3
326,598 + +0.1
326,665 + +0.3
326,666 - +0.6
326,666 - +0.9
326,927 + +0.3
326,928 - +0.4
326,928 - -0.4
327,031 + -0.3
327,032 - +2.1
327,104 + -0.3
327,106 + -0.4
327,122 + +0.2
327,123 - +0.1
327,180 - SMa0612 0.13 +0.1
327,180 - SMa0612 0.13 +0.3
327,334 + SMa0612 0.22 +0.2
327,522 - SMa0612 0.33 -0.3
327,540 - SMa0612 0.34 +1.6
327,576 - SMa0612 0.36 -0.2
327,587 + SMa0612 0.37 +0.2
327,587 + SMa0612 0.37 +1.2
327,587 + SMa0612 0.37 +0.5
327,626 + SMa0612 0.39 +0.3
327,644 + SMa0612 0.41 +0.3
327,644 + SMa0612 0.41 -0.9
327,644 + SMa0612 0.41 +0.1
327,644 + SMa0612 0.41 +1.8
327,644 + SMa0612 0.41 +1.4
327,644 + SMa0612 0.41 +0.0
327,644 + SMa0612 0.41 +0.4
327,645 - SMa0612 0.41 -0.6
327,645 - SMa0612 0.41 -2.6
327,645 - SMa0612 0.41 +0.6
327,645 - SMa0612 0.41 +0.3
327,830 + SMa0612 0.52 +0.4
327,830 + SMa0612 0.52 +0.1
327,830 + SMa0612 0.52 -0.3
327,830 + SMa0612 0.52 +1.7
327,831 - SMa0612 0.52 +0.1
327,833 + SMa0612 0.52 +0.2
327,834 - SMa0612 0.52 -0.9
327,834 - SMa0612 0.52 -0.0
327,834 - SMa0612 0.52 -0.5
327,912 - SMa0612 0.57 -0.7
327,912 - SMa0612 0.57 -0.0
327,941 + SMa0612 0.59 -0.1
327,942 - SMa0612 0.59 +0.1
327,942 - SMa0612 0.59 +0.5
327,942 - SMa0612 0.59 -0.1
328,088 - SMa0612 0.67 -0.4
328,172 + SMa0612 0.72 -0.0
328,172 + SMa0612 0.72 +0.7
328,173 - SMa0612 0.73 -1.8
328,174 + SMa0612 0.73 -0.7
328,236 - SMa0612 0.76 +0.3
328,236 - SMa0612 0.76 -0.3
328,236 - SMa0612 0.76 +0.3
328,247 + SMa0612 0.77 +0.2
328,286 + SMa0612 0.79 +0.0
328,286 + SMa0612 0.79 +0.5
328,338 + SMa0612 0.82 -0.2
328,339 - SMa0612 0.83 +1.2
328,343 + SMa0612 0.83 -0.5
328,343 + SMa0612 0.83 +0.1
328,343 + SMa0612 0.83 -0.3
328,344 - SMa0612 0.83 -0.6
328,344 - SMa0612 0.83 +0.2
328,344 - SMa0612 0.83 +0.3
328,397 + SMa0612 0.86 +0.1
328,397 + SMa0612 0.86 +0.4
328,397 + SMa0612 0.86 +0.7
328,398 - SMa0612 0.86 +0.0
328,398 - SMa0612 0.86 -0.3
328,398 - SMa0612 0.86 +0.4
328,398 - SMa0612 0.86 -0.2
328,398 - SMa0612 0.86 +0.2
328,400 - SMa0612 0.86 +0.4
328,422 - SMa0612 0.88 +0.1
328,451 + SMa0612 0.89 +1.8
328,451 + SMa0612 0.89 -0.3
328,452 - SMa0612 0.89 -0.2
328,457 + SMa0612 0.90 +0.6
328,457 + SMa0612 0.90 +1.0
328,458 - SMa0612 0.90 +0.2
328,458 - SMa0612 0.90 +0.3
328,461 - SMa0612 0.90 +0.5
328,462 + +1.3
328,517 + -0.3
328,518 - -0.5
328,815 + SMa0615 0.24 +0.4
328,816 - SMa0615 0.24 +1.5
328,833 + SMa0615 0.27 +0.5
328,834 - SMa0615 0.27 -0.1
328,917 + SMa0615 0.38 +0.7
328,972 + SMa0615 0.45 -1.0
328,973 - SMa0615 0.45 +0.4
328,984 - SMa0615 0.47 +0.1
328,984 - SMa0615 0.47 -0.4
329,002 + SMa0615 0.49 -0.4
329,002 + SMa0615 0.49 -0.3
329,055 + SMa0615 0.56 -0.0
329,136 + SMa0615 0.67 +0.4
329,337 + +1.0
329,338 - -1.5
329,338 - +0.2
329,338 - -0.4
329,338 - +1.2

Or see this region's nucleotide sequence